| α2, 3 and α2, 6 N-linked sialic acids facilitate efficient binding and transduction by adeno-associated virus types 1 and 6 Z Wu, E Miller, M Agbandje-McKenna, RJ Samulski Journal of virology 80 (18), 9093-9103, 2006 | 401 | 2006 |
| Prediction of protein–ligand binding poses via a combination of induced fit docking and metadynamics simulations AJ Clark, P Tiwary, K Borrelli, S Feng, EB Miller, R Abel, RA Friesner, ... Journal of chemical theory and computation 12 (6), 2990-2998, 2016 | 221 | 2016 |
| Capsid antibodies to different adeno-associated virus serotypes bind common regions BL Gurda, MA DiMattia, EB Miller, A Bennett, R McKenna, WS Weichert, ... Journal of virology 87 (16), 9111-9124, 2013 | 142 | 2013 |
| Characterization of the adeno-associated virus 1 and 6 sialic acid binding site LY Huang, A Patel, R Ng, EB Miller, S Halder, R McKenna, A Asokan, ... Journal of virology 90 (11), 5219-5230, 2016 | 102 | 2016 |
| Reliable and accurate solution to the induced fit docking problem for protein–ligand binding EB Miller, RB Murphy, D Sindhikara, KW Borrelli, MJ Grisewood, F Ranalli, ... Journal of Chemical Theory and Computation 17 (4), 2630-2639, 2021 | 85 | 2021 |
| Production, purification and preliminary X-ray crystallographic studies of adeno-associated virus serotype 1 EB Miller, B Gurda-Whitaker, L Govindasamy, R McKenna, S Zolotukhin, ... Acta Crystallographica Section F: Structural Biology and Crystallization …, 2006 | 70 | 2006 |
| Benchmarking refined and unrefined AlphaFold2 structures for hit discovery Y Zhang, M Vass, D Shi, E Abualrous, JM Chambers, N Chopra, C Higgs, ... Journal of Chemical Information and Modeling 63 (6), 1656-1667, 2023 | 52 | 2023 |
| Computational methods for high resolution prediction and refinement of protein structures RA Friesner, R Abel, DA Goldfeld, EB Miller, CS Murrett Current opinion in structural biology 23 (2), 177-184, 2013 | 28 | 2013 |
| Prediction of Long Loops with Embedded Secondary Structure using the Protein Local Optimization Program EB Miller, CS Murrett, K Zhu, S Zhao, DA Goldfeld, J Bylund, RA Friesner Journal of Chemical Theory and Computation 9 (3), 1846-1864, 2013 | 16 | 2013 |
| Induced-fit docking enables accurate free energy perturbation calculations in homology models T Xu, K Zhu, A Beautrait, J Vendome, KW Borrelli, R Abel, RA Friesner, ... Journal of Chemical Theory and Computation 18 (9), 5710-5724, 2022 | 14 | 2022 |
| On the Validity of the Born− Oppenheimer Separation and the Accuracy of Diagonal Corrections in Anharmonic Molecular Vibrations S Hirata, EB Miller, Y Ohnishi, K Yagi The Journal of Physical Chemistry A 113 (45), 12461-12469, 2009 | 11 | 2009 |
| Reliable and Accurate Prediction of Single-Residue pKa Values through Free Energy Perturbation Calculations D Coskun, W Chen, AJ Clark, C Lu, ED Harder, L Wang, RA Friesner, ... Journal of Chemical Theory and Computation 18 (12), 7193-7204, 2022 | 7 | 2022 |
| A welfare analysis of subsidies for airports BI Miller, JF Dewey, D Denslow Jr, EB Miller Journal of Air Transport Management 50, 83-90, 2016 | 7 | 2016 |
| Using AlphaFold and experimental structures for the prediction of the structure and binding affinities of GPCR complexes via induced fit docking and free energy perturbation D Coskun, M Lihan, JP Rodrigues, M Vass, D Robinson, RA Friesner, ... Journal of Chemical Theory and Computation 20 (1), 477-489, 2023 | 6 | 2023 |
| Enabling structure-based drug discovery utilizing predicted models EB Miller, H Hwang, M Shelley, A Placzek, JP Rodrigues, RK Suto, ... Cell 187 (3), 521-525, 2024 | 2 | 2024 |
| Advancing Loop Prediction to Ultra-High Resolution Sampling EB Miller Columbia University, 2014 | 1 | 2014 |
| Structure–Activity Relationship of a Pyrrole Based Series of PfPKG Inhibitors as Anti-Malarials JA Gilleran, K Ashraf, M Delvillar, T Eck, R Fondekar, EB Miller, ... Journal of medicinal chemistry 67 (5), 3467-3503, 2024 | | 2024 |
| Accounting for induced fit effects EB Miller US Patent 11,651,840, 2023 | | 2023 |
| 727. Characterizing the Adeno-Associated Virus 1 Sialic Receptor Binding Site and Its Overlap with Antigenic Epitopes LY Huang, A Patel, R Ng, EB Miller, S Halder, R McKenna, A Asokan, ... Molecular Therapy 24, S287, 2016 | | 2016 |
| AAV VECTOR BIOLOGY LY Huang, R Ng, EB Miller, R McKenna, A Asokan, M Agbandje-McKenna Molecular Therapy 22, 1, 2014 | | 2014 |
