Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution S Ling, Z Hu, Z Yang, F Yang, Y Li, P Lin, K Chen, L Dong, L Cao, Y Tao, ... Proceedings of the National Academy of Sciences 112 (47), E6496-E6505, 2015 | 393 | 2015 |
Statistical and machine learning methods for spatially resolved transcriptomics data analysis Z Zeng, Y Li, Y Li, Y Luo Genome biology 23 (1), 83, 2022 | 100 | 2022 |
Machine learning for lung cancer diagnosis, treatment, and prognosis Y Li, X Wu, P Yang, G Jiang, Y Luo Genomics, Proteomics and Bioinformatics 20 (5), 850-866, 2022 | 53 | 2022 |
Mycobacterium tuberculosis clinical isolates carry mutational signatures of host immune environments Q Liu, J Wei, Y Li, M Wang, J Su, Y Lu, MG López, X Qian, Z Zhu, H Wang, ... Science advances 6 (22), eaba4901, 2020 | 37 | 2020 |
Genetic load and potential mutational meltdown in cancer cell populations Y Zhang, Y Li, T Li, X Shen, T Zhu, Y Tao, X Li, D Wang, Q Ma, Z Hu, J Liu, ... Molecular biology and evolution 36 (3), 541-552, 2019 | 23 | 2019 |
Performance‐weighted‐voting model: An ensemble machine learning method for cancer type classification using whole‐exome sequencing mutation Y Li, Y Luo Quantitative biology 8 (4), 347-358, 2020 | 18 | 2020 |
Spatiotemporal localization of proteins in mycobacteria J Zhu, ID Wolf, CL Dulberger, HI Won, JC Kester, JA Judd, SE Wirth, ... Cell reports 37 (13), 2021 | 17 | 2021 |
Optimizing the evaluation of gene-targeted panels for tumor mutational burden estimation Y Li, Y Luo Scientific reports 11 (1), 21072, 2021 | 12 | 2021 |
SOAR: a spatial transcriptomics analysis resource to model spatial variability and cell type interactions Y Li, S Dennis, MR Hutch, Y Li, MS Broad, Z Zeng, Y Luo bioRxiv, 2022.04. 17.488596, 2022 | 7 | 2022 |
RNA-seq Analyses reveal roles of the HVCN1 proton channel in Cardiac pH homeostasis X Wu, Y Li, M Maienschein-Cline, L Feferman, L Wu, L Hong Frontiers in Cell and Developmental Biology 10, 860502, 2022 | 6 | 2022 |
Evolution under spatially heterogeneous selection in solid tumors G Li, Z Yang, D Wu, S Liu, X Li, T Li, Y Li, L Liang, W Zou, CI Wu, ... Molecular biology and evolution 39 (1), msab335, 2022 | 5 | 2022 |
Effects of mexiletine on a race-specific mutation in Nav1. 5 associated with long QT syndrome X Wu, Y Li, L Hong Frontiers in Physiology 13, 904664, 2022 | 4 | 2022 |
Machine learning applications in diagnosis, treatment, and prognosis of lung cancer Y Li, X Wu, P Yang, G Jiang, Y Luo Preprint at https://arxiv. org/abs/2203.02794, 2022 | 3 | 2022 |
Informing immunotherapy with multi-omics driven machine learning Y Li, X Wu, D Fang, Y Luo npj Digital Medicine 7 (1), 67, 2024 | 2 | 2024 |
Unsupervised clustering analysis of SARS-Cov-2 population structure reveals six major subtypes at early stage across the world Y Li, Q Liu, Z Zeng, Y Luo 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 2 | 2021 |
Using an unsupervised clustering model to detect the early spread of SARS-CoV-2 worldwide Y Li, Q Liu, Z Zeng, Y Luo Genes 13 (4), 648, 2022 | 1 | 2022 |
Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model Z Yang, M Jia, G Liu, H Hao, L Chen, G Li, S Liu, Y Li, CI Wu, X Lu, ... Plos one 12 (11), e0187551, 2017 | 1 | 2017 |