| Underestimation-assisted global-local cooperative differential evolution and the application to protein structure prediction XG Zhou, CX Peng, J Liu, Y Zhang, GJ Zhang IEEE transactions on evolutionary computation 24 (3), 536-550, 2019 | 52 | 2019 |
| DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning SS Guo, J Liu, XG Zhou, GJ Zhang Bioinformatics 38 (7), 1895-1903, 2022 | 32 | 2022 |
| CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm J Liu, XG Zhou, Y Zhang, GJ Zhang Bioinformatics 36 (8), 2443-2450, 2020 | 30 | 2020 |
| MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction KL Zhao, J Liu, XG Zhou, JZ Su, Y Zhang, GJ Zhang Bioinformatics 37 (23), 4350-4356, 2021 | 23 | 2021 |
| Improved model quality assessment using sequence and structural information by enhanced deep neural networks J Liu, K Zhao, G Zhang Briefings in bioinformatics 24 (1), bbac507, 2023 | 16 | 2023 |
| Structural analogue-based protein structure domain assembly assisted by deep learning CX Peng, XG Zhou, YH Xia, J Liu, MH Hou, GJ Zhang Bioinformatics 38 (19), 4513–4521, 2022 | 14 | 2022 |
| A de novo protein structure prediction by iterative partition sampling, topology adjustment and residue-level distance deviation optimization J Liu, KL Zhao, GX He, LJ Wang, XG Zhou, GJ Zhang Bioinformatics 38 (1), 99-107, 2022 | 10 | 2022 |
| De novo protein structure prediction by incremental inter-residue geometries prediction and model quality assessment using deep learning J Liu, GX He, KL Zhao, GJ Zhang bioRxiv, 2022.01. 11.475831, 2022 | 9 | 2022 |
| DomBpred: protein domain boundary prediction based on domain-residue clustering using inter-residue distance ZZ Yu, C Peng, J Liu, B Zhang, XG Zhou, G Zhang IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (2 …, 2022 | 6 | 2022 |
| Estimating protein complex model accuracy based on ultrafast shape recognition and deep learning in CASP15 J Liu, D Liu, G He, G Zhang Proteins: Structure, Function, and Bioinformatics 91 (12), 1861-1870, 2023 | 5 | 2023 |
| GraphGPSM: a global scoring model for protein structure using graph neural networks GH J Liu, D Liu, G Zhang Briefings in Bioinformatics 24 (4), 1-11, 2023 | 5* | 2023 |
| DeepUMQA3: a web server for accurate assessment of interface residue accuracy in protein complexes J Liu, D Liu, GJ Zhang Bioinformatics 39 (10), btad591, 2023 | 4 | 2023 |
| Distance-guided protein folding based on generalized descent direction L Wang, J Liu, Y Xia, J Xu, X Zhou, G Zhang Briefings in bioinformatics 22 (6), bbab296, 2021 | 4 | 2021 |
| Construct a variable-length fragment library for de novo protein structure prediction Q Feng, M Hou, J Liu, K Zhao, G Zhang Briefings in Bioinformatics 23 (3), bbac086, 2022 | 3 | 2022 |
| Multiple conformational states assembly of multidomain proteins using evolutionary algorithm based on structural analogues and sequential homologues C Peng, X Zhou, J Liu, M Hou, SZ Li, G Zhang Fundamental Research, 2024 | 2 | 2024 |
| Assessing protein model quality based on deep graph coupled networks using protein language model D Liu, B Zhang, J Liu, H Li, L Song, G Zhang Briefings in Bioinformatics 25 (1), bbad420, 2024 | 2 | 2024 |
| GraphCPLMQA: Assessing protein model quality based on deep graph coupled networks using protein language model D Liu, B Zhang, J Liu, H Li, L Song, GJ Zhang bioRxiv, 2023.05. 16.540981, 2023 | 2 | 2023 |
| An Overview of Multi-Domain Protein Structure Prediction Methods G Zhang, M Hou, C Peng, J Liu Journal of University of Electronic Science and Technology of China 51 (6 …, 2022 | 2 | 2022 |
| Adaptive Differential Evolution with Information Entropy-Based Mutation Strategy L Wang, X Zhou, T Xie, J Liu, G Zhang IEEE Access 9, 146783-146796, 2021 | 2 | 2021 |
| Review of Protein Structure Prediction Methods Based on Fragment Assembly G Zhang, J Liu, K Zhao Journal of Data Acquisition & Processing 36 (4), 629-638, 2021 | | 2021 |
