| Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus J Isidro, V Borges, M Pinto, D Sobral, JD Santos, A Nunes, V Mixão, ... Nature medicine 28 (8), 1569-1572, 2022 | 616 | 2022 |
| Characteristics of SARS-CoV-2 variants of concern B. 1.1. 7, B. 1.351 or P. 1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021 T Funk, A Pharris, G Spiteri, N Bundle, A Melidou, M Carr, G Gonzalez, ... Eurosurveillance 26 (16), 2100348, 2021 | 334 | 2021 |
| Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ... PLoS biology 20 (8), e3001769, 2022 | 207 | 2022 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021 | 186 | 2021 |
| Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution M Amicone, V Borges, MJ Alves, J Isidro, L Zé-Zé, S Duarte, L Vieira, ... Evolution, medicine, and public health 10 (1), 142-155, 2022 | 148 | 2022 |
| INNUENDO: a cross‐sectoral platform for the integration of genomics in the surveillance of food‐borne pathogens AK Llarena, BF Ribeiro‐Gonçalves, D Nuno Silva, J Halkilahti, ... EFSA Supporting Publications 15 (11), 1498E, 2018 | 85 | 2018 |
| Tracking SARS-CoV-2 lineage B. 1.1. 7 dissemination: insights from nationwide spike gene target failure (SGTF) and spike gene late detection (SGTL) data, Portugal, week 49 2020 … V Borges, C Sousa, L Menezes, AM Gonçalves, M Picão, JP Almeida, ... Eurosurveillance 26 (10), 2100131, 2021 | 69 | 2021 |
| Long-term evolution of SARS-CoV-2 in an immunocompromised patient with non-Hodgkin lymphoma V Borges, J Isidro, M Cunha, D Cochicho, L Martins, L Banha, ... Msphere 6 (4), 10.1128/msphere. 00244-21, 2021 | 63 | 2021 |
| Nosocomial outbreak of SARS-CoV-2 in a “non-COVID-19” hospital ward: virus genome sequencing as a key tool to understand cryptic transmission V Borges, J Isidro, F Macedo, J Neves, L Silva, M Paiva, J Barata, ... Viruses 13 (4), 604, 2021 | 58 | 2021 |
| Virulence and antibiotic resistance plasticity of Arcobacter butzleri: Insights on the genomic diversity of an emerging human pathogen J Isidro, S Ferreira, M Pinto, F Domingues, M Oleastro, JP Gomes, ... Infection, Genetics and Evolution 80, 104213, 2020 | 55 | 2020 |
| Screening of bacteriocinogenic lactic acid bacteria and their characterization as potential probiotics A Pinto, J Barbosa, H Albano, J Isidro, P Teixeira Microorganisms 8 (3), 393, 2020 | 51 | 2020 |
| Imipenem resistance in Clostridium difficile ribotype 017, Portugal J Isidro, A Santos, A Nunes, V Borges, C Silva, L Vieira, AL Mendes, ... Emerging Infectious Diseases 24 (4), 741, 2018 | 37 | 2018 |
| Omicron (BA. 1) SARS-CoV-2 variant is associated with reduced risk of hospitalization and length of stay compared with Delta (B. 1.617. 2) A Peralta-Santos, EF Rodrigues, J Moreno, V Ricoca, P Casaca, ... MedRxiv, 2022.01. 20.22269406, 2022 | 36 | 2022 |
| First draft genome sequence of Monkeypox virus associated with the suspected multi-country outbreak, May 2022 (confirmed case in Portugal) J Isidro, V Borges, M Pinto, R Ferreira, D Sobral, A Nunes, JD Santos, ... Published May 22, 2022 | 35 | 2022 |
| Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature V Borges, D Cordeiro, AI Salas, Z Lodhia, C Correia, J Isidro, ... Microbial genomics 5 (11), e000313, 2019 | 34 | 2019 |
| Congenital SARS-CoV-2 infection in a neonate with severe acute respiratory syndrome CR Correia, M Marçal, F Vieira, E Santos, C Novais, AT Maria, D Malveiro, ... The Pediatric Infectious Disease Journal 39 (12), e439-e443, 2020 | 30 | 2020 |
| Longitudinal Study of Shiga Toxin-Producing Escherichia coli and Campylobacter jejuni on Finnish Dairy Farms and in Raw Milk A Jaakkonen, H Castro, S Hallanvuo, J Ranta, M Rossi, J Isidro, ... Applied and Environmental Microbiology 85 (7), e02910-18, 2019 | 30 | 2019 |
| Genomic study of a Clostridium difficile multidrug resistant outbreak-related clone reveals novel determinants of resistance J Isidro, J Menezes, M Serrano, V Borges, P Paixão, M Mimoso, F Martins, ... Frontiers in microbiology 9, 411079, 2018 | 30 | 2018 |
| Massive dissemination of a SARS-CoV-2 Spike Y839 variant in Portugal V Borges, J Isidro, H Cortes-Martins, S Duarte, L Vieira, R Leite, I Gordo, ... Emerging Microbes & Infections 9 (1), 2488-2496, 2020 | 23 | 2020 |
| Characterization of Multidrug-Resistant Isolates of Salmonella enterica Serovars Heidelberg and Minnesota from Fresh Poultry Meat Imported to Portugal L Silveira, A Nunes, Â Pista, J Isidro, C Belo Correia, M Saraiva, R Batista, ... Microbial Drug Resistance 27 (1), 87-98, 2021 | 21 | 2021 |
