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Yuxuan Hu
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CytoTalk: De novo construction of signal transduction networks using single-cell transcriptomic data
Y Hu, T Peng, L Gao, K Tan
Science Advances 7 (16), eabf1356, 2021
782021
Evaluation and comparison of multi-omics data integration methods for cancer subtyping
R Duan, L Gao, Y Gao, Y Hu, H Xu, M Huang, K Song, H Wang, Y Dong, ...
PLoS computational biology 17 (8), e1009224, 2021
602021
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia
C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ...
Blood, The Journal of the American Society of Hematology 139 (14), 2198-2211, 2022
522022
Optimal control nodes in disease-perturbed networks as targets for combination therapy
Y Hu, C Chen, Y Ding, X Wen, B Wang, L Gao, K Tan
Nature communications 10 (1), 2180, 2019
422019
Mechanisms of entrectinib resistance in a neuroblastoma xenograft model
SP MacFarland, K Naraparaju, R Iyer, P Guan, V Kolla, Y Hu, K Tan, ...
Molecular Cancer Therapeutics 19 (3), 920-926, 2020
232020
Inferring gene regulatory networks using conditional regulation pattern to guide candidate genes
F Xiao, L Gao, Y Ye, Y Hu, R He
PloS one 11 (5), e0154953, 2016
232016
LAceModule: identification of competing endogenous RNA modules by integrating dynamic correlation
X Wen, L Gao, Y Hu
Frontiers in genetics 11, 235, 2020
162020
Feature related multi-view nonnegative matrix factorization for identifying conserved functional modules in multiple biological networks
P Wang, L Gao, Y Hu, F Li
BMC bioinformatics 19, 1-13, 2018
142018
Network analysis reveals synergistic genetic dependencies for rational combination therapy in Philadelphia chromosome–like acute lymphoblastic leukemia
YY Ding, H Kim, K Madden, JP Loftus, GM Chen, DH Allen, R Zhang, J Xu, ...
Clinical Cancer Research 27 (18), 5109-5122, 2021
112021
Identifying cancer specific driver modules using a network-based method
F Li, L Gao, P Wang, Y Hu
Molecules 23 (5), 1114, 2018
92018
Detection of deregulated modules using deregulatory linked path
Y Hu, L Gao, K Shi, DKY Chiu
PloS one 8 (7), e70412, 2013
72013
Unsupervised and supervised discovery of tissue cellular neighborhoods from cell phenotypes
Y Hu, J Rong, Y Xu, R Xie, J Peng, L Gao, K Tan
Nature Methods 21 (2), 267-278, 2024
62024
CEPICS: a comparison and evaluation platform for integration methods in cancer subtyping
R Duan, L Gao, H Xu, K Song, Y Hu, H Wang, Y Dong, C Zhang, S Jia
Frontiers in Genetics 10, 966, 2019
62019
CytoTalk: De novo construction of signal transduction networks using single-cell RNA-Seq data
Y Hu, T Peng, L Gao, K Tan
Biorxiv, 2020.03. 29.014464, 2020
42020
Learning predictive models of tissue cellular neighborhoods from cell phenotypes with graph pooling
Y Hu, J Rong, R Xie, Y Xu, J Peng, L Gao, K Tan
bioRxiv, 2022.11. 06.515344, 2022
22022
Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia
C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ...
bioRxiv, 2020.12. 06.413930, 2020
22020
RobustCCC: a robustness evaluation tool for cell-cell communication methods
C Zhang, L Gao, Y Hu, Z Huang
Frontiers in Genetics 14, 1236956, 2023
12023
Efficient image denoising with heterogeneous kernel-based CNN
Y Hu, C Tian, J Zhang, S Zhang
Neurocomputing 592, 127799, 2024
2024
Beaconet: A Reference‐Free Method for Integrating Multiple Batches of Single‐Cell Transcriptomic Data in Original Molecular Space
H Xu, Y Ye, R Duan, Y Gao, Y Hu, L Gao
Advanced Science, 2306770, 2024
2024
Adjustment of scRNA-seq data to improve cell-type decomposition of spatial transcriptomics
L Wang, Y Hu, L Gao
Briefings in Bioinformatics 25 (2), bbae063, 2024
2024
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