Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017 | 1313 | 2017 |
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions JN Burton, A Adey, RP Patwardhan, R Qiu, JO Kitzman, J Shendure Nature biotechnology 31 (12), 1119-1125, 2013 | 1292 | 2013 |
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ... Science 348 (6237), 910-914, 2015 | 1202 | 2015 |
Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018 | 777 | 2018 |
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition A Adey, HG Morrison, Asan, X Xun, JO Kitzman, EH Turner, B Stackhouse, ... Genome biology 11, 1-17, 2010 | 635 | 2010 |
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ... Molecular cell 71 (5), 858-871. e8, 2018 | 618 | 2018 |
Decoding long nanopore sequencing reads of natural DNA AH Laszlo, IM Derrington, BC Ross, H Brinkerhoff, A Adey, IC Nova, ... Nature biotechnology 32 (8), 829-833, 2014 | 488 | 2014 |
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line A Adey, JN Burton, JO Kitzman, JB Hiatt, AP Lewis, BK Martin, R Qiu, ... Nature 500 (7461), 207-211, 2013 | 407 | 2013 |
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 397 | 2020 |
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing S Amini, D Pushkarev, L Christiansen, E Kostem, T Royce, C Turk, ... Nature genetics 46 (12), 1343-1349, 2014 | 355 | 2014 |
Haplotype-resolved genome sequencing of a Gujarati Indian individual JO Kitzman, AP MacKenzie, A Adey, JB Hiatt, RP Patwardhan, ... Nature biotechnology 29 (1), 59-63, 2011 | 305 | 2011 |
Sequencing thousands of single-cell genomes with combinatorial indexing SA Vitak, KA Torkenczy, JL Rosenkrantz, AJ Fields, L Christiansen, ... Nature methods 14 (3), 302-308, 2017 | 289 | 2017 |
Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer … CC Pritchard, SJ Salipante, K Koehler, C Smith, S Scroggins, B Wood, ... The Journal of Molecular Diagnostics 16 (1), 56-67, 2014 | 279 | 2014 |
megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering S Boissel, J Jarjour, A Astrakhan, A Adey, A Gouble, P Duchateau, ... Nucleic acids research 42 (4), 2591-2601, 2014 | 250 | 2014 |
Highly scalable generation of DNA methylation profiles in single cells RM Mulqueen, D Pokholok, SJ Norberg, KA Torkenczy, AJ Fields, D Sun, ... Nature biotechnology 36 (5), 428-431, 2018 | 236 | 2018 |
Haplotype-resolved genome sequencing: experimental methods and applications MW Snyder, A Adey, JO Kitzman, J Shendure Nature Reviews Genetics 16 (6), 344-358, 2015 | 211 | 2015 |
Massively parallel contiguity mapping JA Shendure, JJ Schwartz, AC Adey, CI Lee, JB Hiatt, JO Kitzman, ... US Patent 10,457,936, 2019 | 197 | 2019 |
Tagmentation-based whole-genome bisulfite sequencing Q Wang, L Gu, A Adey, B Radlwimmer, W Wang, V Hovestadt, M Bähr, ... Nature protocols 8 (10), 2022-2032, 2013 | 180 | 2013 |
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity A Adey, JO Kitzman, JN Burton, R Daza, A Kumar, L Christiansen, ... Genome research 24 (12), 2041-2049, 2014 | 178 | 2014 |
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data D Sun, X Guan, AE Moran, LY Wu, DZ Qian, P Schedin, MS Dai, ... Nature biotechnology 40 (4), 527-538, 2022 | 171 | 2022 |