| Programmed genome rearrangements in ciliates I Rzeszutek, XX Maurer-Alcalá, M Nowacki Cellular and Molecular Life Sciences 77, 4615-4629, 2020 | 53 | 2020 |
| Twisted tales: insights into genome diversity of ciliates using single-cell ‘omics XX Maurer-Alcalá, Y Yan, OA Pilling, R Knight, LA Katz Genome Biology and Evolution 10 (8), 1927-1938, 2018 | 38 | 2018 |
| Single-cell transcriptomics reveal a correlation between genome architecture and gene family evolution in ciliates Y Yan, XX Maurer-Alcalá, R Knight, SL Kosakovsky Pond, LA Katz MBio 10 (6), 10.1128/mbio. 02524-19, 2019 | 36 | 2019 |
| Phylogenomics of ‘Discosea’: a new molecular phylogenetic perspective on Amoebozoa with flat body forms YI Tekle, OR Anderson, LA Katz, XX Maurer-Alcalá, MAC Romero, ... Molecular phylogenetics and evolution 99, 144-154, 2016 | 35 | 2016 |
| Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics) XX Maurer-Alcalá, R Knight, LA Katz MBio 9 (1), 10.1128/mbio. 01836-17, 2018 | 29 | 2018 |
| PhyloToL: a taxon/gene-rich phylogenomic pipeline to explore genome evolution of diverse eukaryotes MA Cerón-Romero, XX Maurer-Alcalá, JD Grattepanche, Y Yan, ... Molecular biology and evolution 36 (8), 1831-1842, 2019 | 26 | 2019 |
| Characterization of the Life Cycle and Heteromeric Nature of the Macronucleus of the Ciliate Chilodonella uncinata Using Fluorescence Microscopy L Bellec, XX Maurer‐Alcala, LA Katz Journal of Eukaryotic Microbiology 61 (3), 313-316, 2014 | 22 | 2014 |
| A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing C Wang, T Solberg, XX Maurer-Alcala, EC Swart, F Gao, M Nowacki Cell reports 40 (8), 2022 | 21 | 2022 |
| How ciliated protists survive by cysts: some key points during encystment and excystment Y Li, Y Wang, S Zhang, XX Maurer-Alcalá, Y Yan Frontiers in Microbiology 13, 785502, 2022 | 19 | 2022 |
| Evolutionary origins and impacts of genome architecture in ciliates XX Maurer‐Alcalá, M Nowacki Annals of the New York Academy of Sciences 1447 (1), 110-118, 2019 | 19 | 2019 |
| Nuclear Features of the Heterotrich Ciliate Blepharisma americanum: Genomic Amplification, Life Cycle, and Nuclear Inclusion MM Wancura, Y Yan, LA Katz, XX Maurer‐Alcalá Journal of Eukaryotic Microbiology 65 (1), 4-11, 2018 | 18 | 2018 |
| Deciphering phylogenetic relationships in class Karyorelictea (Protista, Ciliophora) based on updated multi-gene information with establishment of a new order Wilbertomorphida … M Ma, Y Li, XX Maurer-Alcalá, Y Wang, Y Yan Molecular Phylogenetics and Evolution 169, 107406, 2022 | 16 | 2022 |
| Kosakovsky Pond, SL, and Katz, LA (2019) Y Yan, XX Maurer-Alcalá, R Knight Single-cell transcriptomics reveal a correlation between genome architecture …, 0 | 16 | |
| An epigenetic toolkit allows for diverse genome architectures in eukaryotes XX Maurer-Alcalá, LA Katz Current opinion in genetics & development 35, 93-99, 2015 | 14 | 2015 |
| Nuclear Architecture and Patterns of Molecular Evolution Are Correlated in the Ciliate Chilodonella uncinata XX Maurer-Alcalá, LA Katz Genome Biology and Evolution 8 (6), 1634-1642, 2016 | 13 | 2016 |
| Taxon-rich transcriptomics supports higher-level phylogeny and major evolutionary trends in Foraminifera R Sierra, F Mauffrey, J Cruz, M Holzmann, AJ Gooday, X Maurer-Alcalá, ... Molecular Phylogenetics and Evolution 174, 107546, 2022 | 10 | 2022 |
| Old genes in new places: a taxon-rich analysis of interdomain lateral gene transfer events A Cote-L’Heureux, XX Maurer-Alcalá, LA Katz PLoS genetics 18 (6), e1010239, 2022 | 9 | 2022 |
| Combined Genome and Transcriptome Analyses of the Ciliate Schmidingerella arcuata (Spirotrichea) Reveal Patterns of DNA Elimination, Scrambling, and Inversion SA Smith, XX Maurer-Alcalá, Y Yan, LA Katz, LF Santoferrara, ... Genome biology and evolution 12 (9), 1616-1622, 2020 | 8 | 2020 |
| Exploration of the germline genome of the ciliate Chilodonella uncinata through single-cell omics (transcriptomics and genomics). mBio 9: 01836-17 XX Maurer-Alcalá, R Knight, LA Katz | 8 | 2018 |
| Chromatin remodeling is required for sRNA‐guided DNA elimination in Paramecium A Singh, XX Maurer‐Alcalá, T Solberg, L Häußermann, S Gisler, ... The EMBO journal 41 (22), e111839, 2022 | 6 | 2022 |
