| Oral phage therapy of acute bacterial diarrhea with two coliphage preparations: a randomized trial in children from Bangladesh SA Sarker, S Sultana, G Reuteler, D Moine, P Descombes, F Charton, ... EBioMedicine 4, 124-137, 2016 | 495 | 2016 |
| Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, ... Nature Reviews Microbiology 17 (9), 533-545, 2019 | 353 | 2019 |
| Red squirrels in the British Isles are infected with leprosy bacilli C Avanzi, J del-Pozo, A Benjak, K Stevenson, VR Simpson, P Busso, ... Science 354 (6313), 744-747, 2016 | 218 | 2016 |
| A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region JCS Ngabonziza*, C Loiseau*, M Marceau*, A Jouet, F Menardo, ... Nature Communications 11 (1), 1-11, 2020 | 187 | 2020 |
| A new phylogenetic framework for the animal-adapted Mycobacterium tuberculosis complex D Brites, C Loiseau, F Menardo, S Borrell, MB Boniotti, R Warren, ... Frontiers in microbiology 9, 2820, 2018 | 179 | 2018 |
| Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history M Coscolla, S Gagneux, F Menardo, C Loiseau, P Ruiz-Rodriguez, ... Microbial genomics 7 (2), 2021 | 148 | 2021 |
| Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae A Benjak, C Avanzi, P Singh, C Loiseau, S Girma, P Busso, ANB Fontes, ... Nature communications 9 (1), 352, 2018 | 130 | 2018 |
| Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity F Menardo, C Loiseau, D Brites, M Coscolla, SM Gygli, LK Rutaihwa, ... BMC bioinformatics 19 (1), 1-8, 2018 | 120 | 2018 |
| Whole-Genome Sequencing for Drug Resistance Profile Prediction in Mycobacterium tuberculosis SM Gygli, PM Keller, M Ballif, N Blöchliger, R Hömke, M Reinhard, ... Antimicrobial agents and chemotherapy 63 (4), e02175-18, 2019 | 81 | 2019 |
| Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development S Borrell, A Trauner, D Brites, L Rigouts, C Loiseau, M Coscolla, ... PLoS one 14 (3), e0214088, 2019 | 69 | 2019 |
| Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacteritum tuberculosis SM Gygli*, C Loiseau*, L Jugheli, N Adamia, A Trauner, M Reinhard, ... Nature Medicine, 1-7, 2021 | 60 | 2021 |
| Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis JL Payne, F Menardo, A Trauner, S Borrell, SM Gygli, C Loiseau, ... PLoS biology 17 (5), e3000265, 2019 | 57 | 2019 |
| An African origin for Mycobacterium bovis C Loiseau*, F Menardo*, A Aseffa, E Hailu, B Gumi, G Ameni, S Berg, ... Evolution, medicine, and public health 2020 (1), 49-59, 2020 | 56 | 2020 |
| Whole genome sequencing distinguishes between relapse and reinfection in recurrent leprosy cases MMA Stefani, C Avanzi, S Bührer-Sékula, A Benjak, C Loiseau, P Singh, ... PLoS neglected tropical diseases 11 (6), e0005598, 2017 | 56 | 2017 |
| Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches ID Otchere, M Coscollá, L Sánchez-Busó, A Asante-Poku, D Brites, ... Scientific reports 8 (1), 1-11, 2018 | 46 | 2018 |
| The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis RAD Castro, A Ross, L Kamwela, M Reinhard, C Loiseau, J Feldmann, ... Molecular biology and evolution 37 (1), 195-207, 2020 | 44 | 2020 |
| Transmission of drug-resistant leprosy in Guinea-Conakry detected using molecular epidemiological approaches C Avanzi, P Busso, A Benjak, C Loiseau, A Fomba, G Doumbia, I Camara, ... Clinical Infectious Diseases 63 (11), 1482-1484, 2016 | 35 | 2016 |
| Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study K Zürcher, ML Reichmuth, M Ballif, C Loiseau, S Borrell, M Reinhard, ... The Lancet Microbe 2 (7), e320-e330, 2021 | 34 | 2021 |
| Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim F Menardo, LK Rutaihwa, M Zwyer, S Borrell, I Comas, EC Conceição, ... F1000Research 10, 2021 | 33 | 2021 |
| The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand M Morales, V Sentchilo, C Bertelli, A Komljenovic, N Kryuchkova-Mostacci, ... PLoS One 11 (11), e0165850, 2016 | 33 | 2016 |
