Phylogenetic systematics of dart-poison frogs and their relatives revisited (Anura: Dendrobatoidea) T Grant, M Rada, M Anganoy-Criollo, A Batista, PH Dias, AM Jeckel, ... South American Journal of Herpetology 12 (s1), 2017 | 173 | 2017 |
Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies B Trevisan, DMC Alcantara, DJ Machado, FPL Marques, DJG Lahr PeerJ 7, e7543, 2019 | 58 | 2019 |
YBYRÁ facilitates comparison of large phylogenetic trees DJ Machado BMC bioinformatics 16, 1-4, 2015 | 45 | 2015 |
Predictions of the SARS-CoV-2 omicron variant (B. 1.1. 529) spike protein receptor-binding domain structure and neutralizing antibody interactions CT Ford, D Jacob Machado, DA Janies Frontiers in Virology 2, 830202, 2022 | 43 | 2022 |
The phylogeny of Dendropsophini (Anura: Hylidae: Hylinae) VGD Orrico, T Grant, J Faivovich, M Rivera‐Correa, MA Rada, ML Lyra, ... Cladistics 37 (1), 73-105, 2021 | 40 | 2021 |
Mitogenome assembly from genomic multiplex libraries: comparison of strategies and novel mitogenomes for five species of frogs DJ Machado, ML Lyra, T Grant Molecular Ecology Resources 16 (3), 686-693, 2016 | 30 | 2016 |
Biogenesis of circular RNAs and their role in cellular and molecular phenotypes of neurological disorders BS Guerra, J Lima, BHS Araujo, LB Torres, JCC Santos, DJS Machado, ... Seminars in Cell & Developmental Biology 114, 1-10, 2021 | 28 | 2021 |
Active Notch signaling is required for arm regeneration in a brittle star V Mashanov, J Akiona, M Khoury, J Ferrier, R Reid, DJ Machado, ... PloS one 15 (5), e0232981, 2020 | 21 | 2020 |
Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2 DJ Machado, R Scott, S Guirales, DA Janies Cladistics 37 (5), 461, 2021 | 18 | 2021 |
The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida) JP Lin, MH Tsai, A Kroh, A Trautman, DJ Machado, LY Chang, R Reid, ... Genomics 112 (2), 1686-1693, 2020 | 18 | 2020 |
A new strategy to infer circularity applied to four new complete frog mitogenomes D Jacob Machado, D Janies, C Brouwer, T Grant Ecology and Evolution 8 (8), 4011-4018, 2018 | 18 | 2018 |
Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and … D Jacob Machado, R Scott, S Guirales, DA Janies Cladistics 37 (5), 461-488, 2021 | 13 | 2021 |
Evidence of absence treated as absence of evidence: The effects of variation in the number and distribution of gaps treated as missing data on the results of standard maximum … DJ Machado, S Castroviejo-Fisher, T Grant Molecular phylogenetics and evolution 154, 106966, 2021 | 8 | 2021 |
FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae A de Bernadi Schneider, D Jacob Machado, S Guirales, DA Janies Viruses 12 (8), 892, 2020 | 8 | 2020 |
Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research V Mashanov, DJ Machado, R Reid, C Brouwer, J Kofsky, DA Janies BMC genomics 23 (1), 574, 2022 | 7* | 2022 |
A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars V Mashanov, L Whaley, K Davis, T Heinzeller, DJ Machado, RW Reid, ... Frontiers in Zoology 19 (1), 15, 2022 | 5 | 2022 |
Comparative characterization of mitogenomes from five orders of cestodes (Eucestoda: tapeworms) B Trevisan, D Jacob Machado, DJG Lahr, FPL Marques Frontiers in Genetics 12, 788871, 2021 | 4 | 2021 |
Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions D Jacob Machado, RA White III, J Kofsky, DA Janies Antimicrobial Stewardship & Healthcare Epidemiology: ASHE 1 (1), e60, 2021 | 4 | 2021 |
Sequencing data of North American SARS-CoV-2 isolates shows widespread complex variants CT Ford, R Scott, DJ Machado, D Janies medRxiv, 2021.01. 27.21250648, 2021 | 4 | 2021 |
Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions DJ Machado, RA White, J Kofsky, DA Janies Antimicrobial Stewardship & Healthcare Epidemiology 1 (1), e60, 2021 | 4 | 2021 |