Butterfly genome reveals promiscuous exchange of mimicry adaptations among species KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ... Nature 487, 94-98, 2012 | 1205* | 2012 |
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database T Brůna, KJ Hoff, A Lomsadze, M Stanke, M Borodovsky NAR genomics and bioinformatics 3 (1), lqaa108, 2021 | 1020 | 2021 |
BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke Bioinformatics 32 (5), 767-769, 2016 | 970 | 2016 |
Whole-Genome Annotation with BRAKER KJ Hoff, A Lomsadze, M Borodovsky, M Stanke Methods in Molecular Biology 1962, 65-95, 2019 | 528 | 2019 |
Finding the missing honey bee genes: lessons learned from a genome upgrade CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ... BMC genomics 15, 1-29, 2014 | 433 | 2014 |
The genomes of two key bumblebee species with primitive eusocial organization BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ... Genome biology 16, 1-32, 2015 | 392 | 2015 |
WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes KJ Hoff, M Stanke Nucleic acids research 41 (W1), W123-W128, 2013 | 274 | 2013 |
Predicting genes in single genomes with AUGUSTUS KJ Hoff, M Stanke Current protocols in bioinformatics 65 (1), e57, 2019 | 243 | 2019 |
Orphelia: predicting genes in metagenomic sequencing reads KJ Hoff, T Lingner, P Meinicke, M Tech Nucleic acids research 37 (suppl_2), W101-W105, 2009 | 169 | 2009 |
Gene prediction in metagenomic fragments: a large scale machine learning approach KJ Hoff, M Tech, T Lingner, R Daniel, B Morgenstern, P Meinicke BMC bioinformatics 9, 1-14, 2008 | 137 | 2008 |
Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria H Philippe, AJ Poustka, M Chiodin, KJ Hoff, C Dessimoz, B Tomiczek, ... Current Biology, 2019 | 132 | 2019 |
The effect of sequencing errors on metagenomic gene prediction KJ Hoff BMC genomics 10, 1-9, 2009 | 128 | 2009 |
TSEBRA: Transcript Selector for BRAKER L Gabriel, KJ Hoff, T Bruna, M Borodovsky, M Stanke BMC Bioinformatics 22, 556, 2021 | 113 | 2021 |
Verticillium transcription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots VT Tran, SA Braus‐Stromeyer, H Kusch, M Reusche, A Kaever, A Kühn, ... New Phytologist 202 (2), 565-581, 2014 | 103 | 2014 |
BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA L Gabriel, T Bruna, KJ Hoff, M Ebel, A Lomsadze, M Borodovsky, ... https://www.biorxiv.org/content/10.1101/2023.06.10.544449v1, 2023 | 56 | 2023 |
Standards recommendations for the Earth BioGenome Project MKN Lawniczak, R Durbin, P Flicek, K Lindblad-Toh, X Wei, JM Archibald, ... Proceedings of the National Academy of Sciences of the United States of …, 2022 | 52 | 2022 |
Gene prediction: methods and protocols KJ Hoff, A Lomsadze, M Borodovsky, M Stanke, M Kollmar Springer, New York 1962, 65-95, 2019 | 51 | 2019 |
The nervous system of Xenacoelomorpha: a genomic perspective E Perea-Atienza, B Gavilán, M Chiodin, JF Abril, KJ Hoff, AJ Poustka, ... Journal of Experimental Biology 218 (4), 618-628, 2015 | 42 | 2015 |
Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation MM Sheffer, A Hoppe, H Krehenwinkel, G Uhl, AW Kuss, L Jensen, ... GigaScience 10 (1), giaa148, 2021 | 41 | 2021 |
Current methods for automated annotation of protein-coding genes KJ Hoff, M Stanke Current Opinion in insect science 7, 8-14, 2015 | 29 | 2015 |