| A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS) I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ... Nature protocols 16 (11), 5030-5082, 2021 | 116* | 2021 |
| Addressing uncertainty in genome-scale metabolic model reconstruction and analysis DB Bernstein, S Sulheim, E Almaas, D Segrè Genome Biology 22, 1-22, 2021 | 110 | 2021 |
| Coordinated regulation of acid resistance in Escherichia coli P Aquino, B Honda, S Jaini, A Lyubetskaya, K Hosur, JG Chiu, I Ekladious, ... BMC systems biology 11, 1-15, 2017 | 71 | 2017 |
| Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome DB Bernstein, FE Dewhirst, D Segre Elife 8, e39733, 2019 | 38* | 2019 |
| Enhancing microbiome research through genome-scale metabolic modeling NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ... MSystems 6 (6), e00599-21, 2021 | 20* | 2021 |
| Construction and modeling of a coculture microplate for real-time measurement of microbial interactions C Jo, DB Bernstein, N Vaisman, HM Frydman, D Segrè Msystems 8 (2), e00017-21, 2023 | 14* | 2023 |
| Elucidating the fuzziness in physician decision making in ARDS DB Bernstein, B Nguyen, GB Allen, JHT Bates Journal of clinical monitoring and computing 27, 357-363, 2013 | 11 | 2013 |
| Controlling mechanical ventilation in acute respiratory distress syndrome with fuzzy logic B Nguyen, DB Bernstein, JHT Bates Journal of critical care 29 (4), 551-556, 2014 | 9 | 2014 |
| Evaluating E. coli genome‐scale metabolic model accuracy with high‐throughput mutant fitness data DB Bernstein, B Akkas, MN Price, AP Arkin Molecular Systems Biology 19 (12), e11566, 2023 | 8* | 2023 |
| Stoichiometric modeling of artificial string chemistries reveals constraints on metabolic network structure D Moyer, AR Pacheco, DB Bernstein, D Segrè Journal of Molecular Evolution 89 (7), 472-483, 2021 | 5* | 2021 |
| Probabilistic metabolic modeling of microbial communities DB Bernstein Boston University, 2020 | | 2020 |
| Fuzzy Logic Tool For Choosing Tidal Volume And PEEP In Acute Lung Injury B Nguyen, DB Bernstein, JHT Bates A48. MECHANICAL VENTILATION, A1683-A1683, 2012 | | 2012 |
