NAMD: Biomolecular simulation on thousands of processors JC Phillips, G Zheng, S Kumar, LV Kalé SC'02: Proceedings of the 2002 ACM/IEEE Conference on Supercomputing, 36-36, 2002 | 368 | 2002 |
Bigsim: A parallel simulator for performance prediction of extremely large parallel machines G Zheng, G Kakulapati, LV Kalé 18th International Parallel and Distributed Processing Symposium, 2004 …, 2004 | 335 | 2004 |
FTC-Charm++: an in-memory checkpoint-based fault tolerant runtime for Charm++ and MPI G Zheng, L Shi, LV Kalé 2004 ieee international conference on cluster computing (ieee cat. no …, 2004 | 290 | 2004 |
Performance evaluation of adaptive MPI C Huang, G Zheng, L Kalé, S Kumar Proceedings of the eleventh ACM SIGPLAN symposium on Principles and practice …, 2006 | 181 | 2006 |
Adaptive techniques for clustered N-body cosmological simulations H Menon, L Wesolowski, G Zheng, P Jetley, L Kale, T Quinn, F Governato Computational Astrophysics and Cosmology 2, 1-16, 2015 | 176 | 2015 |
Achieving high performance on extremely large parallel machines: performance prediction and load balancing G Zheng University of Illinois at Urbana-Champaign, 2005 | 169 | 2005 |
A scalable double in-memory checkpoint and restart scheme towards exascale G Zheng, X Ni, LV Kalé IEEE/IFIP International Conference on Dependable Systems and Networks …, 2012 | 163 | 2012 |
Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system S Kumar, C Huang, G Zheng, E Bohm, A Bhatele, JC Phillips, H Yu, ... IBM Journal of Research and Development 52 (1.2), 177-188, 2008 | 136 | 2008 |
Simulation-based performance prediction for large parallel machines G Zheng, T Wilmarth, P Jagadishprasad, LV Kalé International Journal of Parallel Programming 33, 183-207, 2005 | 128 | 2005 |
Programming petascale applications with Charm++ and AMPI LV Kale, E Bohm, CL Mendes, T Wilmarth, G Zheng Petascale Computing: Algorithms and Applications 1, 421-441, 2007 | 126 | 2007 |
Overcoming scaling challenges in biomolecular simulations across multiple platforms A Bhatele, S Kumar, C Mei, JC Phillips, G Zheng, LV Kale 2008 IEEE International Symposium on Parallel and Distributed Processing, 1-12, 2008 | 117 | 2008 |
Periodic hierarchical load balancing for large supercomputers G Zheng, A Bhatele, E Meneses, LV Kale The International Journal of High Performance Computing Applications 25 (4 …, 2011 | 111 | 2011 |
Charm++ and AMPI: Adaptive runtime strategies via migratable objects LV Kale, G Zheng Advanced Computational Infrastructures for Parallel and Distributed Adaptive …, 2009 | 108 | 2009 |
Hierarchical load balancing for charm++ applications on large supercomputers G Zheng, E Meneses, A Bhatele, LV Kale 2010 39th International Conference on Parallel Processing Workshops, 436-444, 2010 | 97 | 2010 |
ParFUM: a parallel framework for unstructured meshes for scalable dynamic physics applications OS Lawlor, S Chakravorty, TL Wilmarth, N Choudhury, I Dooley, G Zheng, ... Engineering with Computers 22, 215-235, 2006 | 93 | 2006 |
Scaling applications to massively parallel machines using projections performance analysis tool LV Kale, G Zheng, CW Lee, S Kumar Future Generation Computer Systems 22 (3), 347-358, 2006 | 92 | 2006 |
Enabling and scaling biomolecular simulations of 100 million atoms on petascale machines with a multicore-optimized message-driven runtime C Mei, Y Sun, G Zheng, EJ Bohm, LV Kale, JC Phillips, C Harrison Proceedings of 2011 International Conference for High Performance Computing …, 2011 | 83 | 2011 |
NAMD user’s guide M Bhandarkar, R Brunner, C Chipot, A Dalke, S Dixit, P Grayson, ... Urbana 51, 61801, 2003 | 65 | 2003 |
Performance evaluation of automatic checkpoint-based fault tolerance for ampi and charm++ G Zheng, C Huang, LV Kalé ACM SIGOPS Operating Systems Review 40 (2), 90-99, 2006 | 57 | 2006 |
Scaling molecular dynamics to 3000 processors with projections: A performance analysis case study LV Kalé, S Kumar, G Zheng, CW Lee Computational Science—ICCS 2003: International Conference, Melbourne …, 2003 | 51 | 2003 |