Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content NM Springer, K Ying, Y Fu, T Ji, CT Yeh, Y Jia, W Wu, T Richmond, ... PLoS genetics 5 (11), e1000734, 2009 | 592 | 2009 |
Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome S Liu, CT Yeh, T Ji, K Ying, H Wu, HM Tang, Y Fu, D Nettleton, ... PLoS genetics 5 (11), e1000733, 2009 | 230 | 2009 |
Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction Z Chen, DE Hagen, CG Elsik, T Ji, CJ Morris, LE Moon, RM Rivera Proceedings of the National Academy of Sciences 112 (15), 4618-4623, 2015 | 145 | 2015 |
Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids RA Swanson-Wagner, R DeCook, Y Jia, T Bancroft, T Ji, X Zhao, ... science 326 (5956), 1118-1120, 2009 | 142 | 2009 |
Gene expression of zebrafish embryos exposed to titanium dioxide nanoparticles and hydroxylated fullerenes B Jovanović, T Ji, D Palić Ecotoxicology and environmental safety 74 (6), 1518-1525, 2011 | 76 | 2011 |
Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing Z Chen, DE Hagen, J Wang, CG Elsik, T Ji, LG Siqueira, PJ Hansen, ... Epigenetics 11 (7), 501-516, 2016 | 71 | 2016 |
Identification of micro RNA s and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j‐3p in soybean nodulation Z Yan, MS Hossain, S Arikit, O Valdés‐López, J Zhai, J Wang, M Libault, ... New Phytologist 207 (3), 748-759, 2015 | 68 | 2015 |
Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa J Hou, X Shi, C Chen, MS Islam, AF Johnson, T Kanno, B Huettel, MR Yen, ... Proceedings of the National Academy of Sciences 115 (48), E11321-E11330, 2018 | 59 | 2018 |
Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection Z Yan, MS Hossain, O Valdés‐López, NT Hoang, J Zhai, J Wang, ... Plant Biotechnology Journal 14 (1), 332-341, 2016 | 50 | 2016 |
Glutamine supplementation enhances development of in vitro-produced porcine embryos and increases leucine consumption from the medium PR Chen, BK Redel, LD Spate, T Ji, SR Salazar, RS Prather Biology of reproduction 99 (5), 938-948, 2018 | 40 | 2018 |
Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome Y Li, DE Hagen, T Ji, MR Bakhtiarizadeh, WM Frederic, EM Traxler, ... Epigenetics 14 (9), 850-876, 2019 | 38 | 2019 |
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution N Blavet, H Yang, H Su, P Solanský, RN Douglas, M Karafiátová, ... Proceedings of the National Academy of Sciences 118 (23), e2104254118, 2021 | 37 | 2021 |
Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome Z Chen, DE Hagen, T Ji, CG Elsik, RM Rivera Scientific reports 7 (1), 12667, 2017 | 36 | 2017 |
What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment S Cui, T Ji, J Li, J Cheng, J Qiu Statistical applications in genetics and molecular biology 15 (2), 87-105, 2016 | 28 | 2016 |
Impacts of Salmonella enteritidis infection on liver transcriptome in broilers DJ Coble, EE Sandford, T Ji, J Abernathy, D Fleming, H Zhou, SJ Lamont genesis 51 (5), 357-364, 2013 | 27 | 2013 |
Genomic imbalance determines positive and negative modulation of gene expression in diploid maize X Shi, H Yang, C Chen, J Hou, KM Hanson, PS Albert, T Ji, J Cheng, ... The Plant Cell 33 (4), 917-939, 2021 | 26 | 2021 |
Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler The Plant Cell 33 (4), 901-916, 2021 | 24 | 2021 |
Differential gene expression in response to eCry3. 1Ab ingestion in an unselected and eCry3. 1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population Z Zhao, LN Meihls, BE Hibbard, T Ji, CG Elsik, KS Shelby Scientific reports 9 (1), 4896, 2019 | 19 | 2019 |
Maternal hyperleptinemia is associated with male offspring’s altered vascular function and structure in mice KA Pennington, FI Ramirez-Perez, KE Pollock, OO Talton, CA Foote, ... PLoS One 11 (5), e0155377, 2016 | 19 | 2016 |
Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance AF Johnson, J Hou, H Yang, X Shi, C Chen, MS Islam, T Ji, J Cheng, ... Journal of genetics and genomics 47 (2), 93-103, 2020 | 18 | 2020 |