| Environmental genome shotgun sequencing of the Sargasso Sea JC Venter, K Remington, JF Heidelberg, AL Halpern, D Rusch, JA Eisen, ... science 304 (5667), 66-74, 2004 | 5357 | 2004 |
| The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific DB Rusch, AL Halpern, G Sutton, KB Heidelberg, S Williamson, ... PLoS biology 5 (3), e77, 2007 | 2334 | 2007 |
| A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ... Nature 462 (7276), 1056-1060, 2009 | 1076 | 2009 |
| Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ... PLoS biology 4 (9), e286, 2006 | 872 | 2006 |
| Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments BA Methe, KE Nelson, JA Eisen, IT Paulsen, W Nelson, JF Heidelberg, ... Science 302 (5652), 1967-1969, 2003 | 866 | 2003 |
| Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ... Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013 | 844 | 2013 |
| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 588 | 2021 |
| Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters D Wu, SC Daugherty, SE Van Aken, GH Pai, KL Watkins, H Khouri, ... PLoS biology 4 (6), e188, 2006 | 536 | 2006 |
| One bacterial cell, one complete genome T Woyke, D Tighe, K Mavromatis, A Clum, A Copeland, W Schackwitz, ... PloS one 5 (4), e10314, 2010 | 260 | 2010 |
| The Calyptogena magnifica Chemoautotrophic Symbiont Genome ILG Newton, T Woyke, TA Auchtung, GF Dilly, RJ Dutton, MC Fisher, ... Science 315 (5814), 998-1000, 2007 | 221 | 2007 |
| Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment CJ Castelle, LA Hug, KC Wrighton, BC Thomas, KH Williams, D Wu, ... Nature communications 4 (1), 2120, 2013 | 215 | 2013 |
| Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups D Wu, G Jospin, JA Eisen PloS one 8 (10), e77033, 2013 | 208 | 2013 |
| Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release BJ Haas, JR Wortman, CM Ronning, LI Hannick, RK Smith, R Maiti, ... BMC biology 3, 1-19, 2005 | 183 | 2005 |
| Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts K Penn, D Wu, JA Eisen, N Ward Applied and Environmental Microbiology 72 (2), 1680-1683, 2006 | 151 | 2006 |
| Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response EA Becker, PM Seitzer, A Tritt, D Larsen, M Krusor, AI Yao, D Wu, ... PLoS genetics 10 (11), e1004784, 2014 | 149 | 2014 |
| Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum D Wu, J Raymond, M Wu, S Chatterji, Q Ren, JE Graham, DA Bryant, ... PLoS One 4 (1), e4207, 2009 | 134 | 2009 |
| Adaptations to Submarine Hydrothermal Environments Exemplified by the Genome of Nautilia profundicola BJ Campbell, JL Smith, TE Hanson, MG Klotz, LY Stein, CK Lee, D Wu, ... PLoS genetics 5 (2), e1000362, 2009 | 123 | 2009 |
| Expansion of the global RNA virome reveals diverse clades of bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... Cell 185 (21), 4023-4037. e18, 2022 | 121 | 2022 |
| Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees D Wu, M Wu, A Halpern, DB Rusch, S Yooseph, M Frazier, JC Venter, ... PloS one 6 (3), e18011, 2011 | 105 | 2011 |
| The IMG/M data management and analysis system v. 7: content updates and new features IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ... Nucleic acids research 51 (D1), D723-D732, 2023 | 104 | 2023 |
