Metabolic flexibility of enigmatic SAR 324 revealed through metagenomics and metatranscriptomics CS Sheik, S Jain, GJ Dick Environmental microbiology 16 (1), 304-317, 2014 | 192 | 2014 |
The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs RA Lesniewski, S Jain, K Anantharaman, PD Schloss, GJ Dick The ISME Journal 6 (12), 2257-2268, 2012 | 157 | 2012 |
Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling BJ Baker, CS Sheik, CA Taylor, S Jain, A Bhasi, JD Cavalcoli, GJ Dick The ISME journal 7 (10), 1962-1973, 2013 | 147 | 2013 |
Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea M Li, BJ Baker, K Anantharaman, S Jain, JA Breier, GJ Dick Nature communications 6 (1), 8933, 2015 | 142 | 2015 |
Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET‐743 MM Schofield, S Jain, D Porat, GJ Dick, DH Sherman Environmental microbiology 17 (10), 3964-3975, 2015 | 112 | 2015 |
Design, construction, and in vivo augmentation of a complex gut microbiome AG Cheng, PY Ho, A Aranda-Díaz, S Jain, BY Feiqiao, X Meng, M Wang, ... Cell 185 (19), 3617-3636. e19, 2022 | 105 | 2022 |
Airborne bacteria in earth's lower stratosphere resemble taxa detected in the troposphere: results from a new NASA aircraft bioaerosol collector (ABC) DJ Smith, JD Ravichandar, S Jain, DW Griffin, H Yu, Q Tan, J Thissen, ... Frontiers in Microbiology 9, 1752, 2018 | 96 | 2018 |
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles MR Olm, D Dahan, MM Carter, BD Merrill, FB Yu, S Jain, X Meng, ... Science 376 (6598), 1220-1223, 2022 | 78 | 2022 |
Cyanobacterial life at low O2: community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole mat AA Voorhies, BA Biddanda, ST Kendall, S Jain, DN Marcus, SC Nold, ... Geobiology 10 (3), 250-267, 2012 | 73 | 2012 |
Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes MA Berry, JD White, TW Davis, S Jain, TH Johengen, GJ Dick, O Sarnelle, ... Frontiers in Microbiology 8, 365, 2017 | 72 | 2017 |
Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol A Vorobev, S Jagadevan, S Jain, K Anantharaman, GJ Dick, S Vuilleumier, ... Applied and environmental microbiology 80 (10), 3044-3052, 2014 | 66 | 2014 |
Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume M Li, S Jain, BJ Baker, C Taylor, GJ Dick Environmental microbiology 16 (1), 60-71, 2014 | 61 | 2014 |
Elucidating the impact of microbial community biodiversity on pharmaceutical biotransformation during wastewater treatment LB Stadler, J Delgado Vela, S Jain, GJ Dick, NG Love Microbial biotechnology 11 (6), 995-1007, 2018 | 48 | 2018 |
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes MM Carter, MR Olm, BD Merrill, D Dahan, S Tripathi, SP Spencer, ... Cell 186 (14), 3111-3124. e13, 2023 | 45 | 2023 |
Genomic and transcriptomic resolution of organic matter utilization among deep-sea bacteria in guaymas basin hydrothermal plumes M Li, S Jain, GJ Dick Frontiers in Microbiology 7, 196076, 2016 | 40 | 2016 |
Single-cell (meta-) genomics of a dimorphic Candidatus Thiomargarita nelsonii reveals genomic plasticity BE Flood, P Fliss, DS Jones, GJ Dick, S Jain, AK Kaster, M Winkel, ... Frontiers in microbiology 7, 187989, 2016 | 31 | 2016 |
Unraveling the Physiological Roles of the Cyanobacterium Geitlerinema sp. BBD and Other Black Band Disease Community Members through Genomic Analysis … PA Den Uyl, LL Richardson, S Jain, GJ Dick PLoS One 11 (6), e0157953, 2016 | 24 | 2016 |
Mapping the T cell repertoire to a complex gut bacterial community K Nagashima, A Zhao, K Atabakhsh, M Bae, JE Blum, A Weakley, S Jain, ... Nature 621 (7977), 162-170, 2023 | 18 | 2023 |
Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome M Wang, LJ Osborn, S Jain, X Meng, A Weakley, J Yan, WJ Massey, ... Cell 186 (13), 2839-2852. e21, 2023 | 16 | 2023 |
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes BD Merrill, MM Carter, MR Olm, D Dahan, S Tripathi, SP Spencer, B Yu, ... BioRxiv, 2022 | 16 | 2022 |