关注
Nikolay V. Plotnikov
Nikolay V. Plotnikov
Treeline Biosciences
在 treeline.bio 的电子邮件经过验证 - 首页
标题
引用次数
引用次数
年份
Paradynamics: an effective and reliable model for ab initio QM/MM free-energy calculations and related tasks
NV Plotnikov, SCL Kamerlin, A Warshel
The Journal of Physical Chemistry B 115 (24), 7950-7962, 2011
1082011
Quantitative exploration of the molecular origin of the activation of GTPase
BR Prasad, NV Plotnikov, J Lameira, A Warshel
Proceedings of the National Academy of Sciences 110 (51), 20509-20514, 2013
90*2013
Addressing open questions about phosphate hydrolysis pathways by careful free energy mapping
BR Prasad, NV Plotnikov, A Warshel
The Journal of Physical Chemistry B 117 (1), 153-163, 2013
702013
Exploring, refining, and validating the paradynamics QM/MM sampling
NV Plotnikov, A Warshel
The Journal of Physical Chemistry B 116 (34), 10342-10356, 2012
652012
Quantifying the mechanism of phosphate monoester hydrolysis in aqueous solution by evaluating the relevant ab initio QM/MM free-energy surfaces
NV Plotnikov, BR Prasad, S Chakrabarty, ZT Chu, A Warshel
The Journal of Physical Chemistry B 117 (42), 12807-12819, 2013
582013
Biopharmaceutical Informatics: supporting biologic drug development via molecular modelling and informatics
S Kumar, NV Plotnikov, JC Rouse, SK Singh
Journal of Pharmacy and Pharmacology 70 (5), 595-608, 2018
412018
Identification of quinoline-based RIP2 kinase inhibitors with an improved therapeutic index to the hERG ion channel
PA Haile, LN Casillas, MJ Bury, JF Mehlmann, R Singhaus Jr, ...
ACS Medicinal Chemistry Letters 9 (10), 1039-1044, 2018
322018
Quantifying the risks of asparagine deamidation and aspartate isomerization in biopharmaceuticals by computing reaction free-energy surfaces
NV Plotnikov, SK Singh, JC Rouse, S Kumar
The Journal of Physical Chemistry B 121 (4), 719-730, 2017
322017
Molecular origin of mechanical sensitivity of the reaction rate in anthracene cyclophane isomerization reveals structural motifs for rational design of mechanophores
NV Plotnikov, TJ Martinez
The Journal of Physical Chemistry C 120 (32), 17898-17908, 2016
182016
Molaris-Xg
A Warshel, ZT Chu, J Villa, M Strajbl, CN Schutz, A Shurki, S Vicatos, ...
University of Southern California: Los Angeles, CA, 2012
152012
Molecular thermodynamic modeling of the morphology transitions in a solution of a diblock copolymer containing a weak polyelectrolyte chain
AI Victorov, NV Plotnikov, PD Hong
The Journal of Physical Chemistry B 114 (27), 8846-8860, 2010
142010
Computing the free energy barriers for less by sampling with a coarse reference potential while retaining accuracy of the target fine model
NV Plotnikov
Journal of Chemical Theory and Computation 10 (8), 2987-3001, 2014
132014
Mesoscale morphology and dissociation equilibrium in pH-sensitive block copolymer gels
N Plotnikov, A Victorov
Fluid phase equilibria 261 (1-2), 26-34, 2007
92007
Identification and Optimization of RNA-Splicing Modulators as Huntingtin Protein-Lowering Agents for the Treatment of Huntington’s Disease
L Liu, K Malagu, AF Haughan, V Khetarpal, AJ Stott, W Esmieu, HD Vater, ...
Journal of Medicinal Chemistry 66 (18), 13205-13246, 2023
62023
Pressure-induced neutral-to-ionic transition in an amorphous organic material
Y Ren, S Lee, JM Christensen, NV Plotnikov, M Burgess, TJ Martínez, ...
Chemistry of Materials 28 (18), 6446-6449, 2016
52016
Conformational dynamics and DNA recognition by human MutSβ
JH Lee, M Thomsen, H Daub, SC Steinbacher, A Sztyler, ...
BioRxiv, 2023.05. 08.539930, 2023
32023
Correction to identification of quinoline-based RIP2 kinase inhibitors with an improved therapeutic index to the hERG ion channel
PA Haile, LN Casillas, MJ Bury, JF Mehlmann, R Singhaus Jr, ...
ACS Medicinal Chemistry Letters 11 (6), 1353-1353, 2020
32020
Advancing ab initio QM/MM Free Energy Calculations: Refining, Validating and Quantifying the Reference Potential Approach
NV Plotnikov
University of Southern California, 2013
12013
Studying catalysis by QM/MM approaches should not be a black box process
R Prasad, L Kamerlin, N Plotnikov, A Warshel
Thermodynamics and Catalysis 3, 4, 2012
12012
Identification of orthosteric inhibitors of MutSbeta ATPase function
G Brace, K Tillack, P Johnson, M Ritzefeld, S Schaertl, E Frush, B Warfield, ...
2024
系统目前无法执行此操作,请稍后再试。
文章 1–20