| Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus J Isidro, V Borges, M Pinto, D Sobral, JD Santos, A Nunes, V Mixão, ... Nature medicine 28 (8), 1569-1572, 2022 | 671 | 2022 |
| Probable person-to-person transmission of Legionnaires’ disease AM Correia, JS Ferreira, V Borges, A Nunes, B Gomes, R Capucho, ... New England Journal of Medicine 374 (5), 497-498, 2016 | 293 | 2016 |
| Polymorphisms in the Nine Polymorphic Membrane Proteins of Chlamydia trachomatis across All Serovars: Evidence for Serovar Da Recombination and … JP Gomes, A Nunes, WJ Bruno, MJ Borrego, C Florindo, D Dean Journal of bacteriology 188 (1), 275-286, 2006 | 177 | 2006 |
| Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots JP Gomes, WJ Bruno, A Nunes, N Santos, C Florindo, MJ Borrego, ... Genome research 17 (1), 50-60, 2007 | 162 | 2007 |
| Evolution, phylogeny, and molecular epidemiology of Chlamydia A Nunes, JP Gomes Infection, Genetics and Evolution 23, 49-64, 2014 | 161 | 2014 |
| Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation M Pinto, V Borges, M Antelo, M Pinheiro, A Nunes, J Azevedo, ... Nature microbiology 2 (1), 1-11, 2016 | 109 | 2016 |
| Quaternary ammonium surfactant structure determines selective toxicity towards bacteria: mechanisms of action and clinical implications in antibacterial prophylaxis ÂS Inácio, NS Domingues, A Nunes, PT Martins, MJ Moreno, LM Estronca, ... Journal of Antimicrobial Chemotherapy 71 (3), 641-654, 2016 | 95 | 2016 |
| Legionella pneumophila strain associated with the first evidence of person-to-person transmission of Legionnaires’ disease: a unique mosaic genetic backbone V Borges, A Nunes, DA Sampaio, L Vieira, J Machado, MJ Simões, ... Scientific reports 6 (1), 26261, 2016 | 79 | 2016 |
| Adaptive Evolution of the Chlamydia trachomatis Dominant Antigen Reveals Distinct Evolutionary Scenarios for B- and T-cell Epitopes: Worldwide Survey A Nunes, PJ Nogueira, MJ Borrego, JP Gomes PloS one 5 (10), e13171, 2010 | 67 | 2010 |
| Evolutionary Dynamics of ompA, the Gene Encoding the Chlamydia trachomatis Key Antigen A Nunes, MJ Borrego, B Nunes, C Florindo, JP Gomes Journal of bacteriology 191 (23), 7182-7192, 2009 | 64 | 2009 |
| Comparative Expression Profiling of the Chlamydia trachomatis pmp Gene Family for Clinical and Reference Strains A Nunes, JP Gomes, S Mead, C Florindo, H Correia, MJ Borrego, D Dean PLoS One 2 (9), e878, 2007 | 62 | 2007 |
| Directional evolution of Chlamydia trachomatis towards niche-specific adaptation V Borges, A Nunes, R Ferreira, MJ Borrego, JP Gomes Journal of bacteriology 194 (22), 6143-6153, 2012 | 55 | 2012 |
| Lymphogranuloma venereum in Portugal: unusual events and new variants during 2007 JP Gomes, A Nunes, C Florindo, MA Ferreira, I Santo, J Azevedo, ... Sexually transmitted diseases 36 (2), 88-91, 2009 | 54 | 2009 |
| Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins FF Vale, A Nunes, M Oleastro, JP Gomes, DA Sampaio, R Rocha, ... Scientific reports 7 (1), 42471, 2017 | 51 | 2017 |
| Chlamydia trachomatisdiversity viewed as a tissue-specific coevolutionary arms race A Nunes, PJ Nogueira, MJ Borrego, JP Gomes Genome biology 9, 1-13, 2008 | 50 | 2008 |
| Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets A Brinkmann, A Andrusch, A Belka, C Wylezich, D Höper, A Pohlmann, ... Journal of clinical microbiology 57 (8), 10.1128/jcm. 00466-19, 2019 | 47 | 2019 |
| Genomic features beyond Chlamydia trachomatis phenotypes: what do we think we know? A Nunes, MJ Borrego, JP Gomes Infection, Genetics and Evolution 16, 392-400, 2013 | 44 | 2013 |
| Dissecting whole-genome sequencing-based online tools for predicting resistance in Mycobacterium tuberculosis: can we use them for clinical decision guidance? R Macedo, A Nunes, I Portugal, S Duarte, L Vieira, JP Gomes Tuberculosis 110, 44-51, 2018 | 40 | 2018 |
| Whole-genome sequence analysis of multidrug-resistant Campylobacter isolates: a focus on aminoglycoside resistance determinants A Fabre, M Oleastro, A Nunes, A Santos, E Sifré, A Ducournau, L Bénéjat, ... Journal of clinical microbiology 56 (9), 10.1128/jcm. 00390-18, 2018 | 39 | 2018 |
| Effect of long-term laboratory propagation on Chlamydia trachomatis genome dynamics V Borges, R Ferreira, A Nunes, M Sousa-Uva, M Abreu, MJ Borrego, ... Infection, Genetics and Evolution 17, 23-32, 2013 | 39 | 2013 |
