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Jacob M Remington
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AMPGAN v2: Machine Learning-Guided Design of Antimicrobial Peptides
JL CM Van Oort, JB Ferrell, JM Remington, S Wshah
Journal of Chemical Information and Modeling 61 (5), 2198–2207, 2021
562021
On the origin of multiexponential fluorescence decays from 2-aminopurine-labeled dinucleotides
JM Remington, AM Philip, M Hariharan, B Kohler
The Journal of Chemical Physics 145 (15), 2016
192016
Molecular basis of class B GPCR selectivity for the neuropeptides PACAP and VIP
C Liao, JM Remington, V May, J Li
Frontiers in Molecular Biosciences 8, 644644, 2021
182021
Thermosetting supramolecular polymerization of compartmentalized DNA fibers with stereo sequence and length control
MD Dore, T Trinh, M Zorman, D de Rochambeau, CM Platnich, P Xu, ...
Chem 7 (9), 2395-2414, 2021
172021
Aggregation state of synergistic antimicrobial peptides
JM Remington, C Liao, M Sharafi, EJ Ste. Marie, JB Ferrell, RJ Hondal, ...
The Journal of Physical Chemistry Letters 11 (21), 9501-9506, 2020
162020
A generative approach toward precision antimicrobial peptide design
JB Ferrell, JM Remington, CM Van Oort, M Sharafi, R Aboushousha, ...
BioRxiv, 2020.10. 02.324087, 2020
122020
Molecular basis for the adaptive evolution of environment-sensing by H-NS proteins
X Zhao, UF Shahul Hameed, V Kharchenko, C Liao, F Huser, ...
Elife 10, e57467, 2021
112021
Subnanosecond emission dynamics of AT DNA oligonucleotides
DJ Skowron, Y Zhang, AA Beckstead, JM Remington, M Strawn, B Kohler
ChemPhysChem 17 (21), 3558-3569, 2016
112016
A Photoresponsive Intramolecular Triplex Motif That Enables Rapid and Reversible Control of Aptamer Binding Activity
T Trinh, IAP Thompson, F Clark, JM Remington, M Eisenstein, J Li, ...
ACS nano 16 (9), 14549-14557, 2022
102022
Enhanced sampling protocol to elucidate fusion peptide opening of SARS-CoV-2 spike protein
JM Remington, KT McKay, JB Ferrell, ST Schneebeli, J Li
Biophysical Journal 120 (14), 2848-2858, 2021
102021
Two‐Dimensional Supramolecular Polymerization of DNA Amphiphiles is Driven by Sequence‐Dependent DNA‐Chromophore Interactions
M Ghufran Rafique, JM Remington, F Clark, H Bai, V Toader, ...
Angewandte Chemie 135 (24), e202217814, 2023
82023
A computational study of cooperative binding to multiple SARS-CoV-2 proteins
J Li, KT McKay, JM Remington, ST Schneebeli
Scientific reports 11 (1), 16307, 2021
72021
GPCR intracellular loop regulation of beta-arrestin-mediated endosomal signaling dynamics
J Li, JM Remington, C Liao, RL Parsons, S Schneebeli, KM Braas, V May, ...
Journal of Molecular Neuroscience 72 (6), 1358-1373, 2022
62022
Molecular Dynamics Simulations of 2-Aminopurine-Labeled Dinucleoside Monophosphates Reveal Multiscale Stacking Kinetics
JM Remington, M McCullagh, B Kohler
The Journal of Physical Chemistry B 123 (10), 2291-2304, 2019
62019
Molecular basis for environment sensing by a nucleoid-structuring bacterial protein filament
X Zhao, JM Remington, ST Schneebeli, ST Arold, J Li
The journal of physical chemistry letters 12 (32), 7878-7884, 2021
52021
GPCRLigNet: rapid screening for GPCR active ligands using machine learning
JM Remington, KT McKay, NB Beckage, JB Ferrell, ST Schneebeli, J Li
Journal of computer-aided molecular design 37 (3), 147-156, 2023
32023
Essential Dynamics Ensemble Docking for Structure-Based GPCR Drug Discovery
K McKay, NB Hamilton, JM Remington, ST Schneebeli, J Li
Frontiers in Molecular Biosciences 9, 879212, 2022
32022
Outcome-based redesign of physical chemistry laboratories during the COVID-19 pandemic
NB Hamilton, JM Remington, ST Schneebeli, J Li
Journal of Chemical Education 99 (2), 639-645, 2022
32022
Machine Learning in a Molecular Modeling Course for Chemistry, Biochemistry, and Biophysics Students
JM Remington, JB Ferrell, M Zorman, A Petrucci, ST Schneebeli, J Li
The Biophysicist 1 (2), 11, 2020
22020
Concerted Rolling and Penetration of Peptides during Membrane Binding
JM Remington, JB Ferrell, ST Schneebeli, J Li
Journal of chemical theory and computation 18 (6), 3921-3929, 2022
12022
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