Binding of BRACO19 to a telomeric G-quadruplex DNA probed by all-atom molecular dynamics simulations with explicit solvent B Machireddy, HJ Sullivan, C Wu Molecules 24 (6), 1010, 2019 | 54 | 2019 |
Binding of Telomestatin, TMPyP4, BSU6037, and BRACO19 to a Telomeric G-Quadruplex–Duplex Hybrid Probed by All-Atom Molecular Dynamics Simulations with Explicit Solvent HJ Sullivan, C Readmond, C Radicella, V Persad, TJ Fasano, C Wu ACS omega 3 (11), 14788-14806, 2018 | 39 | 2018 |
Conserved coronavirus proteins as targets of broad-spectrum antivirals CC Melo-Filho, T Bobrowski, HJ Martin, Z Sessions, KI Popov, ... Antiviral Research 204, 105360, 2022 | 21 | 2022 |
Three-dimensional structure of RNA monomeric G-quadruplex containing ALS and FTD related G4C2 repeat and its binding with TMPyP4 probed by homology modeling based on … K Mulholland, HJ Sullivan, J Garner, J Cai, B Chen, C Wu ACS chemical neuroscience 11 (1), 57-75, 2019 | 18 | 2019 |
Molecular dynamics study on the binding of an anticancer DNA G-quadruplex stabilizer, CX-5461, to human telomeric, c-KIT1, and c-Myc G-quadruplexes and a DNA duplex HJ Sullivan, B Chen, C Wu Journal of chemical information and modeling 60 (10), 5203-5224, 2020 | 16 | 2020 |
To Probe Full and Partial Activation of Human Peroxisome Proliferator‐Activated Receptors by Pan‐Agonist Chiglitazar Using Molecular Dynamics Simulations HJ Sullivan, X Wang, S Nogle, S Liao, C Wu PPAR research 2020 (1), 5314187, 2020 | 14 | 2020 |
Targeted protein degradation: advances, challenges, and prospects for computational methods B Mostofian, HJ Martin, A Razavi, S Patel, B Allen, W Sherman, ... Journal of Chemical Information and Modeling 63 (17), 5408-5432, 2023 | 13 | 2023 |
MolPredictX: Online biological activity predictions by machine learning models MT Scotti, C Herrera-Acevedo, R Menezes, HJ Martin, E Muratov, ... Molecular Informatics, 2022 | 13 | 2022 |
Molecular dynamics simulation of biased agonists at the dopamine D2 receptor suggests the mechanism of receptor functional selectivity D Montgomery, A Campbell, HJ Sullivan, C Wu Journal of Biomolecular Structure and Dynamics 37 (12), 3206-3225, 2019 | 13 | 2019 |
Binding Interactions of Ergotamine and Dihydroergotamine to 5-Hydroxytryptamine Receptor 1B (5-HT1b) Using Molecular Dynamics Simulations and Dynamic … HJ Sullivan, A Tursi, K Moore, A Campbell, C Floyd, C Wu Journal of chemical information and modeling 60 (3), 1749-1765, 2020 | 11 | 2020 |
To probe the binding pathway of a selective compound (D089-0563) to c-MYC Pu24 G-quadruplex using free ligand binding simulations and Markov state model analysis B Chen, G Fountain, HJ Sullivan, N Paradis, C Wu Physical Chemistry Chemical Physics 22 (39), 22567-22583, 2020 | 8 | 2020 |
Praemonitus praemunitus: can we forecast and prepare for future viral disease outbreaks? Z Sessions, T Bobrowski, HJ Martin, JMT Beasley, A Kothari, T Phares, ... FEMS Microbiology Reviews, fuad048, 2023 | 4* | 2023 |
Pharmacokinetics Profiler (PhaKinPro): Model Development, Validation, and Implementation as a Web Tool for Triaging Compounds with Undesired Pharmacokinetics Profiles M Rath, J Wellnitz, HJ Martin, C Melo-Filho, JE Hochuli, GM Silva, ... Journal of Medicinal Chemistry 67 (8), 6508-6518, 2024 | 3 | 2024 |
Small molecule antiviral compound collection (SMACC): A comprehensive, highly curated database to support the discovery of broad-spectrum antiviral drug molecules HJ Martin, CC Melo-Filho, D Korn, RT Eastman, G Rai, A Simeonov, ... Antiviral Research 217, 105620, 2023 | 2 | 2023 |
Small Molecule Antiviral Compound Collection (SMACC): a database to support the discovery of broad-spectrum antiviral drug molecules. AT Holli-Joi Martin, Cleber Melo-Filho, Daniel Korn, Rich Eastman, Ganesha ... bioRxiv, https://doi.org/10.1101/2022.07.09.49939, 2022 | 2 | 2022 |
STOPLIGHT: A Hit Scoring Calculator J Wellnitz, HJ Martin, M Anwar Hossain, M Rath, C Fox, KI Popov, ... Journal of Chemical Information and Modeling, 2024 | 1 | 2024 |
Sequence and structure conservation analysis of the key coronavirus proteins supports the feasibility of discovering broad-spectrum antiviral medications. C Melo-Filho, T Bobrowski, HJ Martin, Z Sessions, K Popov, N Moorman, ... | 1 | 2022 |
Developing New Dopamine D2 Receptor Agonists and Partial Agonists for Parkinson’s Disease and Schizophrenia TM Keck, C Nguyen, E Kurtyan, B Stephanie, R Crowthers, J Tharakan, ... The FASEB Journal 34 (S1), 1-1, 2020 | 1 | 2020 |
Proving the Potential: External Validation of STopTox as in Silico Alternative to Animal Toxicity Testing RS Tieghi, C Melo Filho, HJ Martin, JT Morera Filho, T LaPratt, D Allen, ... | | 2024 |
In Silico and In Vitro Studies of Terpenes from the Fabaceae Family Using the Phenotypic Screening Model against the SARS-CoV-2 Virus NF de Sousa, GD Duarte, CB Moraes, CG Barbosa, HJ Martin, ... Pharmaceutics 16 (7), 912, 2024 | | 2024 |