| sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression E Aparicio-Puerta, R Lebrón, A Rueda, C Gómez-Martín, S Giannoukakos, ... Nucleic acids research 47 (W1), W530-W535, 2019 | 169 | 2019 |
| sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms E Aparicio-Puerta, C Gómez-Martín, S Giannoukakos, JM Medina, ... Nucleic acids research 50 (W1), W710-W717, 2022 | 40 | 2022 |
| The analysis of platelet-derived circRNA repertoire as potential diagnostic biomarker for non-small cell lung cancer S D’ambrosi, A Visser, M Antunes-Ferreira, A Poutsma, S Giannoukakos, ... Cancers 13 (18), 4644, 2021 | 38 | 2021 |
| mirnaQC: a webserver for comparative quality control of miRNA-seq data E Aparicio-Puerta, C Gómez-Martín, S Giannoukakos, JM Medina, ... Nucleic acids research 48 (W1), W262-W267, 2020 | 24 | 2020 |
| Selective isolation of extracellular vesicles from minimally processed human plasma as a translational strategy for liquid biopsies D Fortunato, S Giannoukakos, A Giménez-Capitán, M Hackenberg, ... Biomarker Research 10 (1), 57, 2022 | 19 | 2022 |
| ALL-tRNAseq enables robust tRNA profiling in tissue samples C Scheepbouwer, E Aparicio-Puerta, C Gomez-Martin, H Verschueren, ... Genes & Development 37 (5-6), 243-257, 2023 | 16 | 2023 |
| Digital multiplexed analysis of circular RNAs in FFPE and fresh non‐small cell lung cancer specimens C Pedraz‐Valdunciel, S Giannoukakos, N Potie, A Giménez‐Capitán, ... Molecular Oncology 16 (12), 2367-2383, 2022 | 14 | 2022 |
| Combinatorial blood platelets-derived circRNA and mRNA signature for early-stage lung cancer detection S D’Ambrosi, S Giannoukakos, M Antunes-Ferreira, C Pedraz-Valdunciel, ... International journal of molecular sciences 24 (5), 4881, 2023 | 13 | 2023 |
| On the need of interpretability for biomedical applications: Using fuzzy models for lung cancer prediction with liquid biopsy N Potie, S Giannoukakos, M Hackenberg, A Fernandez 2019 IEEE international conference on fuzzy systems (FUZZ-IEEE), 1-6, 2019 | 11 | 2019 |
| Multiplex analysis of CircRNAs from plasma extracellular vesicle-enriched samples for the detection of early-stage non-small cell lung cancer C Pedraz-Valdunciel, S Giannoukakos, A Giménez-Capitán, D Fortunato, ... Pharmaceutics 14 (10), 2034, 2022 | 8 | 2022 |
| Applying Feature Selection to Improve Predictive Performance and Explainability in Lung Cancer Detection with Soft Computing. N Potie, S Giannoukakos, M Hackenberg, A Fernandez HICSS, 1-10, 2020 | 2 | 2020 |
| Assessing the complementary information from an increased number of biologically relevant features in liquid biopsy-derived RNA-Seq data S Giannoukakos, S D'Ambrosi, D Koppers-Lalic, C Gómez-Martín, ... Heliyon 10 (6), e27360-e27360, 2024 | 1 | 2024 |
| Brief report: circRUNX1 as potential biomarker for cancer recurrence in EGFR mutation-positive surgically resected NSCLC C Pedraz-Valdunciel, M Ito, S Giannoukakos, A Giménez-Capitán, ... JTO Clinical and Research Reports 4 (12), 100604, 2023 | 1 | 2023 |
| Differential expression analysis of circRUNX1 in patients with early resected EGFR-mutant NSCLC. C Pedraz, M Ito, A Giménez-Capitán, S Giannoukakos, MA Molina Vila, ... Journal of Clinical Oncology 41 (16_suppl), 8529-8529, 2023 | | 2023 |
| P23. 02 Digital Multiplexed circRNA Analysis From Plasma-Derived Extracellular Vesicles of Lung Cancer Patients C Pedraz-Valdunciel, M Filipska, S Giannoukakos, N Potie, ... Journal of Thoracic Oncology 16 (10), S1028, 2021 | | 2021 |
| Differential expression of circRNAs allows discrimination of NSCLC from cancer-free lung specimens using the nCounter platform C Pedraz-Valdunciel, MÁ Molina-Vila, S Giannoukakos, N Potie, ... Cancer Research 81 (13_Supplement), 466-466, 2021 | | 2021 |
