Comprehensive characterization of cancer driver genes and mutations MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cell 173 (2), 371-385. e18, 2018 | 2218 | 2018 |
Proteogenomics connects somatic mutations to signalling in breast cancer P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ... Nature 534 (7605), 55-62, 2016 | 1565 | 2016 |
Pathogenic germline variants in 10,389 adult cancers K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ... Cell 173 (2), 355-370. e14, 2018 | 729 | 2018 |
Driver fusions and their implications in the development and treatment of human cancers Q Gao, WW Liang, SM Foltz, G Mutharasu, RG Jayasinghe, S Cao, ... Cell reports 23 (1), 227-238. e3, 2018 | 492 | 2018 |
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 483 | 2020 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 470 | 2019 |
Proteogenomic and metabolomic characterization of human glioblastoma LB Wang*, A Karpova*, MA Gritsenko*, JE Kyle*, S Cao*, Y Li*, ... Cancer Cell, doi: 10.1016/j.ccell.2021.01.006, 2021 | 412 | 2021 |
Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 342 | 2020 |
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456, 2020 | 331 | 2020 |
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition A Reyes, LV Blanton, S Cao, G Zhao, M Manary, I Trehan, MI Smith, ... Proceedings of the National Academy of Sciences 112 (38), 11941-11946, 2015 | 297 | 2015 |
Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 291 | 2021 |
RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ... RNA, 2012 | 290 | 2012 |
Systematic Analysis of Splice-Site-Creating Mutations in Cancer RG Jayasinghe*, S Cao*, Q Gao, MC Wendl, NS Vo, SM Reynolds, ... Cell Reports 23 (1), 270-281, 2018 | 226 | 2018 |
A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 211 | 2021 |
Predicting RNA pseudoknot folding thermodynamics S Cao, SJ Chen Nucleic acids research 34 (9), 2634-2652, 2006 | 189 | 2006 |
Physics-based de novo prediction of RNA 3D structures S Cao, SJ Chen The journal of physical chemistry B 115 (14), 4216-4226, 2011 | 174 | 2011 |
Proteogenomic integration reveals therapeutic targets in breast cancer xenografts K Huang, S Li, P Mertins, S Cao, HP Gunawardena, KV Ruggles, ... Nature communications 8 (1), 14864, 2017 | 154 | 2017 |
Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts XY Woo, J Giordano, A Srivastava, ZM Zhao, MW Lloyd, R de Bruijn, ... Nature genetics 53 (1), 86-99, 2021 | 152 | 2021 |
Predicting RNA folding thermodynamics with a reduced chain representation model S Cao, SJ Chen Rna 11 (12), 1884-1897, 2005 | 149 | 2005 |
Rational truncation of an RNA aptamer to prostate-specific membrane antigen using computational structural modeling WM Rockey, FJ Hernandez, SY Huang, S Cao, CA Howell, GS Thomas, ... Nucleic acid therapeutics 21 (5), 299-314, 2011 | 145 | 2011 |