| The genome of Aiptasia, a sea anemone model for coral symbiosis S Baumgarten, O Simakov, LY Esherick, YJ Liew, EM Lehnert, CT Michell, ... Proceedings of the National Academy of Sciences 112 (38), 11893-11898, 2015 | 434 | 2015 |
| Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle M Aranda, Y Li, YJ Liew, S Baumgarten, O Simakov, MC Wilson, J Piel, ... Scientific reports 6 (1), 39734, 2016 | 346 | 2016 |
| Comparative genomics explains the evolutionary success of reef-forming corals D Bhattacharya, S Agrawal, M Aranda, S Baumgarten, M Belcaid, ... elife 5, e13288, 2016 | 186 | 2016 |
| Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals CR Voolstra, Y Li, YJ Liew, S Baumgarten, D Zoccola, JF Flot, S Tambutté, ... Scientific reports 7 (1), 17583, 2017 | 147 | 2017 |
| Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals S Baumgarten, T Bayer, M Aranda, YJ Liew, A Carr, G Micklem, ... BMC genomics 14, 1-18, 2013 | 123 | 2013 |
| Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium JE Parkinson, S Baumgarten, CT Michell, IB Baums, TC LaJeunesse, ... Genome Biology and Evolution 8 (3), 665-680, 2016 | 121 | 2016 |
| Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians I Wolfowicz, S Baumgarten, PA Voss, EA Hambleton, CR Voolstra, ... Scientific reports 6 (1), 32366, 2016 | 113 | 2016 |
| A specific PfEMP1 is expressed in P. falciparum sporozoites and plays a role in hepatocyte infection G Zanghì, SS Vembar, S Baumgarten, S Ding, J Guizetti, JM Bryant, ... Cell reports 22 (11), 2951-2963, 2018 | 106 | 2018 |
| Metatranscriptome analysis of the reef-building coral Orbicella faveolata indicates holobiont response to coral disease CA Daniels, S Baumgarten, LK Yum, CT Michell, T Bayer, C Arif, C Roder, ... Frontiers in Marine Science 2, 62, 2015 | 89 | 2015 |
| Distinct Bacterial Communities Associated with the Coral Model Aiptasia in Aposymbiotic and Symbiotic States with Symbiodinium T Röthig, RM Costa, F Simona, S Baumgarten, AF Torres, ... Frontiers in Marine Science 3, 234, 2016 | 82 | 2016 |
| Hologenome analysis of two marine sponges with different microbiomes T Ryu, L Seridi, L Moitinho-Silva, M Oates, YJ Liew, C Mavromatis, ... BMC genomics 17, 1-11, 2016 | 78 | 2016 |
| Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development S Baumgarten, JM Bryant, A Sinha, T Reyser, PR Preiser, PC Dedon, ... Nature Microbiology, 2019 | 71 | 2019 |
| Identification of MicroRNAs in the Coral Stylophora pistillata YJ Liew, M Aranda, A Carr, S Baumgarten, D Zoccola, S Tambutté, ... PLoS One 9 (3), e91101, 2014 | 66 | 2014 |
| Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum YJ Liew, Y Li, S Baumgarten, CR Voolstra, M Aranda PLoS Genetics 13 (2), e1006619, 2017 | 64 | 2017 |
| CRISPR in parasitology: not exactly cut and dried! JM Bryant, S Baumgarten, L Glover, S Hutchinson, N Rachidi Trends in parasitology 35 (6), 409-422, 2019 | 55 | 2019 |
| A novel tool for the generation of conditional knockouts to study gene function across the Plasmodium falciparum life cycle M Tibúrcio, ASP Yang, K Yahata, P Suárez-Cortés, H Belda, ... MBio 10 (5), 10.1128/mbio. 01170-19, 2019 | 47* | 2019 |
| Exploring the virulence gene interactome with CRISPR/dCas9 in the human malaria parasite JM Bryant, S Baumgarten, F Dingli, D Loew, A Sinha, A Claës, PR Preiser, ... Molecular Systems Biology 16 (8), e9569, 2020 | 45 | 2020 |
| Evidence for miRNA‐mediated modulation of the host transcriptome in cnidarian–dinoflagellate symbiosis S Baumgarten, MJ Cziesielski, L Thomas, CT Michell, LY Esherick, ... Molecular Ecology 27 (2), 403-418, 2018 | 43 | 2018 |
| Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites F Sindikubwabo, S Ding, T Hussain, P Ortet, M Barakat, S Baumgarten, ... Elife 6, e29391, 2017 | 34 | 2017 |
| Transcriptomes and expression profiling of deep-sea corals from the Red Sea provide insight into the biology of azooxanthellate corals LK Yum, S Baumgarten, T Röthig, C Roder, A Roik, C Michell, ... Scientific reports 7 (1), 6442, 2017 | 32 | 2017 |
