| Revealing the transcriptional heterogeneity of organ‐specific metastasis in human gastric cancer using single‐cell RNA sequencing H Jiang, D Yu, P Yang, R Guo, M Kong, Y Gao, X Yu, X Lu, X Fan Clinical and translational medicine 12 (2), e730, 2022 | 91 | 2022 |
| scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network X Shao, H Yang, X Zhuang, J Liao, P Yang, J Cheng, X Lu, H Chen, X Fan Nucleic acids research 49 (21), e122-e122, 2021 | 74 | 2021 |
| Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk X Shao, C Li, H Yang, X Lu, J Liao, J Qian, K Wang, J Cheng, P Yang, ... Nature Communications 13 (1), 4429, 2022 | 64 | 2022 |
| Single‐cell RNA sequencing reveals the temporal diversity and dynamics of cardiac immunity after myocardial infarction K Jin, S Gao, P Yang, R Guo, D Li, Y Zhang, X Lu, G Fan, X Fan Small Methods 6 (3), 2100752, 2022 | 51 | 2022 |
| De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution J Liao, J Qian, Y Fang, Z Chen, X Zhuang, N Zhang, X Shao, Y Hu, ... Nature Communications 13 (1), 6498, 2022 | 35 | 2022 |
| Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace J Qian, J Liao, Z Liu, Y Chi, Y Fang, Y Zheng, X Shao, B Liu, Y Cui, W Guo, ... Nature Communications 14 (1), 2484, 2023 | 18 | 2023 |
| Massively Parallel CRISPR‐Based Genetic Perturbation Screening at Single‐Cell Resolution J Cheng, G Lin, T Wang, Y Wang, W Guo, J Liao, P Yang, J Chen, X Shao, ... Advanced Science 10 (4), 2204484, 2023 | 11 | 2023 |
| Modern research on Chinese medicine based on single-cell omics: Technologies and strategies PH Yang, LJ Jin, J Liao, X Shao, JY Cheng, L Li, XY Lu, XH Fan Zhongguo Zhong yao za zhi= Zhongguo Zhongyao Zazhi= China Journal of Chinese …, 2022 | 4 | 2022 |
| Reference-free cell-type annotation for single-cell transcriptomics using deep learning with a weighted graph neural network X Shao, H Yang, X Zhuang, J Liao, Y Yang, P Yang, J Cheng, X Lu, ... bioRxiv, 2020.05. 13.094953, 2020 | 4 | 2020 |
| Single-cell RNA sequencing reveals enhanced antitumor immunity after combined application of PD-1 inhibitor and Shenmai injection in non-small cell lung cancer D Yu, P Yang, X Lu, S Huang, L Liu, X Fan Cell Communication and Signaling 21 (1), 169, 2023 | 2 | 2023 |
| ChatCell: Facilitating Single-Cell Analysis with Natural Language Y Fang, K Liu, N Zhang, X Deng, P Yang, Z Chen, X Tang, M Gerstein, ... arXiv preprint arXiv:2402.08303, 2024 | 1 | 2024 |
| A Single-Cell Landscape of Human Liver Transplantation Reveals a Pathogenic Immune Niche Associated with Early Allograft Dysfunction X Shao, Z Wang, K Wang, X Lu, P Zhang, R Guo, J Liao, P Yang, S Zheng, ... Engineering, 2024 | 1 | 2024 |
| Revealing spatial multimodal heterogeneity in tissues with SpaTrio P Yang, L Jin, J Liao, K Jin, X Shao, C Li, J Qian, J Cheng, D Yu, R Guo, ... Cell Genomics 3 (12), 2023 | 1 | 2023 |
| High-throughput transcriptional profiling of perturbations by Panax ginseng saponins and Panax notoginseng saponins using TCM-seq J Cheng, J Chen, J Liao, T Wang, X Shao, J Long, P Yang, A Li, Z Wang, ... Journal of Pharmaceutical Analysis 13 (4), 376-387, 2023 | 1 | 2023 |
| scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network C Li, X Shao, S Zhang, Y Wang, K Jin, P Yang, X Lu, X Fan, Y Wang Cell Reports Medicine, 2024 | | 2024 |
| Sacrificing Adaptability for Functionality: The Ivory Tower of Macular Muller Cells T Zhang, K Jin, S Zeng, P Yang, M Zhu, J Zhang, Y Chen, S Lee, M Yam, ... bioRxiv, 2024.04. 28.590478, 2024 | | 2024 |
