| Differential expression in RNA-seq: a matter of depth S Tarazona, F García-Alcalde, J Dopazo, A Ferrer, A Conesa Genome research 21 (12), 2213-2223, 2011 | 1665 | 2011 |
| Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data K Okonechnikov, A Conesa, F García-Alcalde Bioinformatics 32 (2), 292-294, 2016 | 1649 | 2016 |
| Qualimap: evaluating next-generation sequencing alignment data F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ... Bioinformatics 28 (20), 2678-2679, 2012 | 991 | 2012 |
| Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data F García-Alcalde, F García-López, J Dopazo, A Conesa Bioinformatics 27 (1), 137-139, 2011 | 185 | 2011 |
| NOIseq: a RNA-seq differential expression method robust for sequencing depth biases S Tarazona, F García, A Ferrer, J Dopazo, A Conesa EMBnet. journal 17 (B), 18-19, 2011 | 175 | 2011 |
| Helicobacter pylori infection causes characteristic DNA damage patterns in human cells M Koeppel, F Garcia-Alcalde, F Glowinski, P Schlaermann, TF Meyer Cell reports 11 (11), 1703-1713, 2015 | 146 | 2015 |
| Heteroaryldihydropyrimidine (HAP) and sulfamoylbenzamide (SBA) inhibit hepatitis B virus replication by different molecular mechanisms Z Zhou, T Hu, X Zhou, S Wildum, F Garcia-Alcalde, Z Xu, D Wu, Y Mao, ... Scientific reports 7 (1), 42374, 2017 | 137 | 2017 |
| Evidence for a crucial role of a host non-coding RNA in influenza A virus replication C Winterling, M Koch, M Koeppel, F Garcia-Alcalde, A Karlas, TF Meyer RNA Biology 11 (1), 0--1, 2014 | 112 | 2014 |
| Comparative evaluation of rRNA depletion procedures for the improved analysis of bacterial biofilm and mixed pathogen culture transcriptomes OE Petrova, F Garcia-Alcalde, C Zampaloni, K Sauer Scientific reports 7 (1), 41114, 2017 | 81 | 2017 |
| TNFR1 mRNA expression level and TNFR1 gene polymorphisms are predictive markers for susceptibility to develop invasive pulmonary aspergillosis J Sainz, I Salas-Alvarado, E Lopez-Fernandez, C Olmedo, A Comino, ... International journal of immunopathology and pharmacology 23 (2), 423-436, 2010 | 77 | 2010 |
| InFusion: advancing discovery of fusion genes and chimeric transcripts from deep RNA-sequencing data K Okonechnikov, A Imai-Matsushima, L Paul, A Seitz, TF Meyer, ... PloS one 11 (12), e0167417, 2016 | 62 | 2016 |
| Fuzzy association rules for biological data analysis: a case study on yeast FJ Lopez, A Blanco, F Garcia, C Cano, A Marin BMC bioinformatics 9, 1-18, 2008 | 62 | 2008 |
| A novel antibiotic class targeting the lipopolysaccharide transporter C Zampaloni, P Mattei, K Bleicher, L Winther, C Thäte, C Bucher, ... Nature 625 (7995), 566-571, 2024 | 58 | 2024 |
| Combinations of oseltamivir and T-705 extend the treatment window for highly pathogenic influenza A (H5N1) virus infection in mice BM Marathe, SS Wong, P Vogel, F Garcia-Alcalde, RG Webster, ... Scientific reports 6 (1), 26742, 2016 | 56 | 2016 |
| Genome-wide differential genetic profiling characterizes colorectal cancers with genetic instability and specific routes to HLA class I loss and immune escape M Bernal, F García-Alcalde, A Concha, C Cano, A Blanco, F Garrido, ... Cancer Immunology, Immunotherapy 61, 803-816, 2012 | 34 | 2012 |
| Extracting biological knowledge by fuzzy association rule mining FJ Lopez, A Blanco, F Garcia, A Marin 2007 IEEE International Fuzzy Systems Conference, 1-6, 2007 | 29 | 2007 |
| Machine-learning based patient classification using Hepatitis B virus full-length genome quasispecies from Asian and European cohorts AJ Mueller-Breckenridge, F Garcia-Alcalde, S Wildum, SL Smits, ... Scientific Reports 9 (1), 18892, 2019 | 24 | 2019 |
| FISim: A new similarity measure between transcription factor binding sites based on the fuzzy integral F Garcia, F Lopez, C Cano, A Blanco BMC bioinformatics 10 (1), 224, 2009 | 23 | 2009 |
| Intelligent system for the analysis of microarray data using principal components and estimation of distribution algorithms C Cano, F Garcia, FJ Lopez, A Blanco Expert Systems with Applications 36 (3), 4654-4663, 2009 | 19 | 2009 |
| Experimental evolution in morbidostat reveals converging genomic trajectories on the path to triclosan resistance SA Leyn, JE Zlamal, OV Kurnasov, X Li, M Elane, L Myjak, M Godzik, ... Microbial genomics 7 (5), 000553, 2021 | 18 | 2021 |
