A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes M Flemr, R Malik, V Franke, J Nejepinska, R Sedlacek, K Vlahovicek, ... Cell 155 (4), 807-816, 2013 | 313 | 2013 |
Genomation: a toolkit to summarize, annotate and visualize genomic intervals A Akalin, V Franke, K Vlahoviček, CE Mason, D Schübeler Bioinformatics 31 (7), 1127-1129, 2015 | 266 | 2015 |
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ... IScience 24 (3), 2021 | 256* | 2021 |
RNA localization is a key determinant of neurite-enriched proteome A Zappulo, D Van Den Bruck, C Ciolli Mattioli, V Franke, K Imami, ... Nature communications 8 (1), 583, 2017 | 198 | 2017 |
Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M Kim, V Franke, B Brandt, ED Lowenstein, V Schöwel, S Spuler, A Akalin, ... Nature communications 11 (1), 6375, 2020 | 158 | 2020 |
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing K Abe, R Yamamoto, V Franke, M Cao, Y Suzuki, MG Suzuki, ... The EMBO journal 34 (11), 1523-1537, 2015 | 149 | 2015 |
A cohesin-independent role for NIPBL at promoters provides insights in CdLS J Zuin, V Franke, WFJ van IJcken, A Van Der Sloot, ID Krantz, ... PLoS genetics 10 (2), e1004153, 2014 | 149 | 2014 |
Cell-type specialization is encoded by specific chromatin topologies W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ... Nature 599 (7886), 684-691, 2021 | 139 | 2021 |
Sculpting the transcriptome during the oocyte-to-embryo transition in mouse P Svoboda, V Franke, RM Schultz Current topics in developmental biology 113, 305-349, 2015 | 139 | 2015 |
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes V Franke, S Ganesh, R Karlic, R Malik, J Pasulka, F Horvat, M Kuzman, ... Genome research 27 (8), 1384-1394, 2017 | 134 | 2017 |
Alternative 3′ UTRs direct localization of functionally diverse protein isoforms in neuronal compartments C Ciolli Mattioli, A Rom, V Franke, K Imami, G Arrey, M Terne, A Woehler, ... Nucleic acids research 47 (5), 2560-2573, 2019 | 111 | 2019 |
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E Wyler, V Franke, J Menegatti, C Kocks, A Boltengagen, S Praktiknjo, ... Nature communications 10 (1), 4878, 2019 | 110 | 2019 |
The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner F Sleutels, W Soochit, M Bartkuhn, H Heath, S Dienstbach, P Bergmaier, ... Epigenetics & chromatin 5, 1-21, 2012 | 97 | 2012 |
PiGx: reproducible genomics analysis pipelines with GNU Guix R Wurmus, B Uyar, B Osberg, V Franke, A Gosdschan, K Wreczycka, ... Gigascience 7 (12), giy123, 2018 | 62 | 2018 |
HOT or not: examining the basis of high-occupancy target regions K Wreczycka, V Franke, B Uyar, R Wurmus, S Bulut, B Tursun, A Akalin Nucleic acids research 47 (11), 5735-5745, 2019 | 58 | 2019 |
Long non-coding RNA exchange during the oocyte-to-embryo transition in mice R Karlic, S Ganesh, V Franke, E Svobodova, J Urbanova, Y Suzuki, F Aoki, ... Dna research 24 (2), 129-141, 2017 | 58 | 2017 |
Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E Wyler, J Menegatti, V Franke, C Kocks, A Boltengagen, T Hennig, ... Genome Biology 18, 1-19, 2017 | 46 | 2017 |
A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells B van Riel, T Pakozdi, R Brouwer, R Monteiro, K Tuladhar, V Franke, ... Molecular and cellular biology 32 (19), 3814-3822, 2012 | 41 | 2012 |
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC LM Appel, V Franke, M Bruno, I Grishkovskaya, A Kasiliauskaite, ... Nature Communications 12 (1), 6078, 2021 | 37 | 2021 |
Maternal SIN3A regulates reprogramming of gene expression during mouse preimplantation development R Jimenez, EO Melo, O Davydenko, J Ma, M Mainigi, V Franke, ... Biology of reproduction 93 (4), 89, 1-12, 2015 | 36 | 2015 |