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Alisa Khramushin
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Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
6192020
Harnessing protein folding neural networks for peptide–protein docking
T Tsaban, JK Varga, O Avraham, Z Ben-Aharon, A Khramushin, ...
Nature communications 13 (1), 176, 2022
1992022
Matching protein surface structural patches for high-resolution blind peptide docking
A Khramushin, Z Ben-Aharon, T Tsaban, JK Varga, O Avraham, ...
Proceedings of the National Academy of Sciences 119 (18), e2121153119, 2022
17*2022
A unique PRDM13-associated variant in a Georgian Jewish family with probable North Carolina macular dystrophy and the possible contribution of a unique CFH variant
P Namburi, S Khateb, S Meyer, T Bentovim, R Ratnapriya, A Khramushin, ...
Molecular Vision 26, 299, 2020
152020
Modeling beta‐sheet peptide‐protein interactions: Rosetta FlexPepDock in CAPRI rounds 38‐45
A Khramushin, O Marcu, N Alam, O Shimony, D Padhorny, E Brini, KA Dill, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1037-1049, 2020
122020
Elucidation of Short linear motif based interactions and dynamics of the ezrin, radixin, moesin and merlin FERM domains
M Ali, A Khramushin, V Yadav, O Schueler-Furman, Y Ivarsson
Biochemistry 62 (11), 2023
7*2023
Protocols for all-atom reconstruction and high-resolution refinement of protein–peptide complex structures
AE Badaczewska-Dawid, A Khramushin, A Kolinski, O Schueler-Furman, ...
Protein Structure Prediction, 273-287, 2020
72020
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