COVID-19: epidemiology, evolution, and cross-disciplinary perspectives J Sun, WT He, L Wang, A Lai, X Ji, X Zhai, G Li, MA Suchard, J Tian, ... Trends in molecular medicine 26 (5), 483-495, 2020 | 923 | 2020 |
Untangling introductions and persistence in COVID-19 resurgence in Europe P Lemey, N Ruktanonchai, SL Hong, V Colizza, C Poletto, ... Nature 595 (7869), 713-717, 2021 | 164* | 2021 |
Virome characterization of game animals in China reveals a spectrum of emerging pathogens WT He, X Hou, J Zhao, J Sun, H He, W Si, J Wang, Z Jiang, Z Yan, G Xing, ... Cell 185 (7), 1117-1129. e8, 2022 | 154 | 2022 |
Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus WT He, X Ji, W He, S Dellicour, S Wang, G Li, L Zhang, M Gilbert, H Zhu, ... Molecular Biology and Evolution 37 (9), 2641-2654, 2020 | 91 | 2020 |
Context-specific emergence and growth of the SARS-CoV-2 Delta variant JT McCrone, V Hill, S Bajaj, RE Pena, BC Lambert, R Inward, S Bhatt, ... Nature 610 (7930), 154-160, 2022 | 80 | 2022 |
Phylogeography reveals association between swine trade and the spread of porcine epidemic diarrhea virus in China and across the world WT He, N Bollen, Y Xu, J Zhao, S Dellicour, Z Yan, W Gong, C Zhang, ... Molecular Biology and Evolution 39 (2), msab364, 2022 | 46 | 2022 |
Emerging viruses: Cross-species transmission of coronaviruses, filoviruses, henipaviruses, and rotaviruses from bats J Tian, J Sun, D Li, N Wang, L Wang, C Zhang, X Meng, X Ji, MA Suchard, ... Cell Reports 39 (11), 2022 | 39 | 2022 |
Resolving relationships and phylogeographic history of the Nyssa sylvatica complex using data from RAD-seq and species distribution modeling W Zhou, X Ji, S Obata, A Pais, Y Dong, R Peet, QYJ Xiang Molecular Phylogenetics and Evolution 126, 1-16, 2018 | 35 | 2018 |
Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics X Ji, Z Zhang, A Holbrook, A Nishimura, G Baele, A Rambaut, P Lemey, ... Molecular biology and evolution 37 (10), 3047-3060, 2020 | 34 | 2020 |
An examination of school reopening strategies during the SARS-CoV-2 pandemic A Landeros, X Ji, K Lange, TC Stutz, J Xu, ME Sehl, JS Sinsheimer PLoS One 16 (5), e0251242, 2021 | 30 | 2021 |
Snapshot of the evolution and mutation patterns of SARS-CoV-2 J Zhao, J Sun, WT He, X Ji, Q Gao, X Zhai, MA Suchard, SL Hong, ... BioRxiv, 2020.07. 04.187435, 2020 | 27 | 2020 |
Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models Z Zhang, A Nishimura, P Bastide, X Ji, RP Payne, P Goulder, P Lemey, ... | 26 | 2021 |
Divergence dating using mixed effects clock modelling: An application to HIV-1 M Bletsa, MA Suchard, X Ji, S Gryseels, B Vrancken, G Baele, M Worobey, ... Virus Evolution 5 (2), vez036, 2019 | 25 | 2019 |
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA. 1 JLH Tsui, JT McCrone, B Lambert, S Bajaj, RPD Inward, P Bosetti, ... Science 381 (6655), 336-343, 2023 | 22 | 2023 |
Relaxed random walks at scale AA Fisher, X Ji, Z Zhang, P Lemey, MA Suchard Systematic Biology 70 (2), 258-267, 2021 | 22 | 2021 |
Genetic analysis and evolutionary changes of the torque teno sus virus G Li, W Zhang, R Wang, G Xing, S Wang, X Ji, N Wang, S Su, J Zhou International journal of molecular sciences 20 (12), 2881, 2019 | 22 | 2019 |
Phylogenomics, biogeography, and evolution of the blue or whitefruited dogwoods (Cornus)—Insights into morphological and ecological niche divergence … K Lindelof, JA Lindo, W Zhou, X Ji, QY Xiang Journal of Systematics and Evolution 58 (5), 604-645, 2020 | 21 | 2020 |
Shrinkage-based random local clocks with scalable inference AA Fisher, X Ji, A Nishimura, G Baele, P Lemey, MA Suchard Molecular biology and evolution 40 (11), msad242, 2023 | 13 | 2023 |
Disrupted myelination network in the cingulate cortex of Parkinson's disease S Xie, J Yang, S Huang, Y Fan, T Xu, J He, J Guo, X Ji, Z Wang, P Li, ... IET Systems Biology 16 (3-4), 98-119, 2022 | 12 | 2022 |
A phylogenetic approach finds abundant interlocus gene conversion in yeast X Ji, A Griffing, JL Thorne Molecular biology and evolution 33 (9), 2469-2476, 2016 | 12 | 2016 |