Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019 | 4541 | 2019 |
MolProbity: more and better reference data for improved all‐atom structure validation CJ Williams, JJ Headd, NW Moriarty, MG Prisant, LL Videau, LN Deis, ... Protein Science 27 (1), 293-315, 2018 | 3096 | 2018 |
Thyroidal trophic influence on skeletal muscle myosin D Ianuzzo, P Patel, V Chen, P O'brien, C Williams Nature 270 (5632), 74-76, 1977 | 245 | 1977 |
New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink “waters,” and NGL Viewer to recapture online 3D graphics MG Prisant, CJ Williams, VB Chen, JS Richardson, DC Richardson Protein Science 29 (1), 315-329, 2020 | 125 | 2020 |
AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination TC Terwilliger, D Liebschner, TI Croll, CJ Williams, AJ McCoy, BK Poon, ... Nature Methods 21 (1), 110-116, 2024 | 100* | 2024 |
The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models DA Keedy, CJ Williams, JJ Headd, WB Arendall III, VB Chen, GJ Kapral, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 29-49, 2009 | 96 | 2009 |
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ... Nature methods 18 (2), 156-164, 2021 | 80 | 2021 |
A map of the SARS-CoV-2 RNA structurome RJ Andrews, CA O’Leary, VS Tompkins, JM Peterson, HS Haniff, ... NAR genomics and bioinformatics 3 (2), lqab043, 2021 | 57 | 2021 |
An in silico map of the SARS-CoV-2 RNA Structurome RJ Andrews, JM Peterson, HS Haniff, J Chen, C Williams, M Grefe, ... BioRxiv, 2020 | 53 | 2020 |
Soft X-ray spectroscopy with transition-edge sensors at Stanford Synchrotron Radiation Lightsource beamline 10-1 SJ Lee, CJ Titus, R Alonso Mori, ML Baker, DA Bennett, HM Cho, ... Review of Scientific Instruments 90 (11), 2019 | 49 | 2019 |
Acetobacter turbidans α-amino acid ester hydrolase: how a single mutation improves an antibiotic-producing enzyme TRM Barends, JJ Polderman-Tijmes, PA Jekel, C Williams, G Wybenga, ... Journal of Biological Chemistry 281 (9), 5804-5810, 2006 | 44 | 2006 |
Model validation: local diagnosis, correction and when to quit JS Richardson, CJ Williams, BJ Hintze, VB Chen, MG Prisant, LL Videau, ... Acta Crystallographica Section D: Structural Biology 74 (2), 132-142, 2018 | 39 | 2018 |
Eliciting the impacts of cellular noise on metabolic trade-offs by quantitative mass imaging AE Vasdekis, H Alanazi, AM Silverman, CJ Williams, AJ Canul, JB Cliff, ... Nature communications 10 (1), 848, 2019 | 36 | 2019 |
Broad analysis of vicinal disulfides: occurrences, conformations with cis or with trans peptides, and functional roles including sugar binding JS Richardson, LL Videau, CJ Williams, DC Richardson Journal of molecular biology 429 (9), 1321-1335, 2017 | 36 | 2017 |
L-edge spectroscopy of dilute, radiation-sensitive systems using a transition-edge-sensor array CJ Titus, ML Baker, SJ Lee, HM Cho, WB Doriese, JW Fowler, K Gaffney, ... The Journal of chemical physics 147 (21), 2017 | 31 | 2017 |
Accelerating crystal structure determination with iterative AlphaFold prediction TC Terwilliger, PV Afonine, D Liebschner, TI Croll, AJ McCoy, RD Oeffner, ... Acta Crystallographica Section D: Structural Biology 79 (3), 234-244, 2023 | 30 | 2023 |
Assessment of detailed conformations suggests strategies for improving cryoEM models: helix at lower resolution, ensembles, pre-refinement fixups, and validation at multi … JS Richardson, CJ Williams, LL Videau, VB Chen, DC Richardson Journal of Structural Biology 204 (2), 301-312, 2018 | 24 | 2018 |
Making the invisible enemy visible TI Croll, K Diederichs, F Fischer, CD Fyfe, Y Gao, S Horrell, AP Joseph, ... Nature structural & molecular biology 28 (5), 404-408, 2021 | 22 | 2021 |
The 2016 release of the PREDICTS database LN Hudson, T Newbold, S Contu, SLL Hill, I Lysenko, D Palma, ... | 21 | 2016 |
Improving SARS-CoV-2 structures: Peer review by early coordinate release TI Croll, CJ Williams, VB Chen, DC Richardson, JS Richardson Biophysical journal 120 (6), 1085-1096, 2021 | 19 | 2021 |