Contamination in low microbial biomass microbiome studies: issues and recommendations R Eisenhofer, JJ Minich, C Marotz, A Cooper, R Knight, LS Weyrich Trends in microbiology 27 (2), 105-117, 2019 | 779 | 2019 |
Laboratory contamination over time during low‐biomass sample analysis LS Weyrich, AG Farrer, R Eisenhofer, LA Arriola, J Young, CA Selway, ... Molecular ecology resources 19 (4), 982-996, 2019 | 194 | 2019 |
An optimized method for the extraction of ancient eukaryote DNA from marine sediments L Armbrecht, S Herrando‐Pérez, R Eisenhofer, GM Hallegraeff, ... Molecular Ecology Resources 20 (4), 906-919, 2020 | 37 | 2020 |
Microbiome applications for pathology: challenges of low microbial biomass samples during diagnostic testing CA Selway, R Eisenhofer, LS Weyrich The Journal of Pathology: Clinical Research 6 (2), 97-106, 2020 | 35 | 2020 |
Investigating the demographic history of Japan using ancient oral microbiota R Eisenhofer, H Kanzawa-Kiriyama, K Shinoda, LS Weyrich Philosophical Transactions of the Royal Society B 375 (1812), 20190578, 2020 | 32 | 2020 |
Assessing alignment-based taxonomic classification of ancient microbial DNA R Eisenhofer, LS Weyrich PeerJ 7, e6594, 2019 | 30 | 2019 |
Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics L Armbrecht, R Eisenhofer, J Utge, EC Sibert, F Rocha, R Ward, ... ISME communications 1 (1), 66, 2021 | 23 | 2021 |
Ancient microbial DNA in dental calculus: a new method for studying rapid human migration events R Eisenhofer, A Anderson, K Dobney, A Cooper, LS Weyrich The Journal of Island and Coastal Archaeology 14 (2), 149-162, 2019 | 22 | 2019 |
Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus AG Farrer, SL Wright, E Skelly, R Eisenhofer, K Dobney, LS Weyrich Scientific reports 11 (1), 7456, 2021 | 19 | 2021 |
Impact of microbial genome completeness on metagenomic functional inference R Eisenhofer, I Odriozola, A Alberdi ISME communications 3 (1), 12, 2023 | 18 | 2023 |
Proper authentication of ancient DNA is still essential R Eisenhofer, LS Weyrich Genes 9 (3), 122, 2018 | 16 | 2018 |
Reply to Santiago-Rodriguez et al.: proper authentication of ancient DNA is essential R Eisenhofer, A Cooper, LS Weyrich FEMS microbiology ecology 93 (5), fix042, 2017 | 16 | 2017 |
Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons) S Weiss, D Taggart, I Smith, K Helgen, M, R Eisenhofer Animal Microbiome, 2021 | 15 | 2021 |
Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons) R Eisenhofer, KM Helgen, D Taggart Animal microbiome 3, 1-14, 2021 | 13 | 2021 |
Characterising the gut microbiomes in wild and captive short-beaked echidnas reveals diet-associated changes T Perry, E West, R Eisenhofer, A Stenhouse, I Wilson, B Laming, ... Frontiers in Microbiology 13, 687115, 2022 | 11 | 2022 |
Bacterial topography of the upper and lower respiratory tract in pigs M Pirolo, C Espinosa-Gongora, A Alberdi, R Eisenhofer, M Soverini, ... Animal Microbiome 5 (1), 5, 2023 | 7 | 2023 |
Individuality and stability of the koala (Phascolarctos cinereus) faecal microbiota through time R Eisenhofer, KL Brice, MDJ Blyton, SE Bevins, K Leigh, BK Singh, ... PeerJ 11, e14598, 2023 | 5 | 2023 |
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics R Eisenhofer, J Nesme, L Santos-Bay, A Koziol, SJ Sørensen, A Alberdi, ... Microbiology Spectrum 12 (4), e03590-23, 2024 | 4 | 2024 |
Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors A Koziol, I Odriozola, A Leonard, R Eisenhofer, C San José, O Aizpurua, ... Mbio 14 (5), e01606-23, 2023 | 3 | 2023 |
Monitoring the viable grapevine microbiome to enhance the quality of wild wines BL Welsh, R Eisenhofer, SEP Bastian, SP Kidd Microbiology Australia 44 (1), 13-17, 2023 | 3 | 2023 |