| The polyphyly of Plasmodium: comprehensive phylogenetic analyses of the malaria parasites (order Haemosporida) reveal widespread taxonomic conflict SC Galen, J Borner, ES Martinsen, J Schaer, CC Austin, CJ West, ... Royal Society Open Science 5 (5), 171780, 2018 | 150 | 2018 |
| Dating the arthropod tree based on large-scale transcriptome data P Rehm, J Borner, K Meusemann, BM von Reumont, S Simon, H Hadrys, ... Molecular Phylogenetics and Evolution 61 (3), 880-887, 2011 | 136 | 2011 |
| Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects E Dell’Ampio, K Meusemann, NU Szucsich, RS Peters, B Meyer, J Borner, ... Molecular biology and evolution 31 (1), 239-249, 2014 | 133 | 2014 |
| A transcriptome approach to ecdysozoan phylogeny J Borner, P Rehm, RO Schill, I Ebersberger, T Burmester Molecular Phylogenetics and Evolution 80, 79-87, 2014 | 124 | 2014 |
| Phylogeny of haemosporidian blood parasites revealed by a multi-gene approach J Borner, C Pick, J Thiede, OM Kolawole, MT Kingsley, J Schulze, ... Molecular Phylogenetics and Evolution 94, 221-231, 2016 | 106 | 2016 |
| A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator) F Roeding, J Borner, M Kube, S Klages, R Reinhardt, T Burmester Molecular Phylogenetics and Evolution 53 (3), 826-834, 2009 | 97 | 2009 |
| The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences RS Peters, B Meyer, L Krogmann, J Borner, K Meusemann, K Schütte, ... BMC biology 9, 1-14, 2011 | 76 | 2011 |
| Phylogenetic position of Myriapoda revealed by 454 transcriptome sequencing P Rehm, K Meusemann, J Borner, B Misof, T Burmester Molecular Phylogenetics and Evolution 77, 25-33, 2014 | 66 | 2014 |
| The diversity and evolution of chelicerate hemocyanins P Rehm, C Pick, J Borner, J Markl, T Burmester BMC evolutionary biology 12 (1), 19, 2012 | 57 | 2012 |
| The Plasmodium falciparum exportome contains non‐canonical PEXEL/HT proteins J Schulze, M Kwiatkowski, J Borner, H Schlüter, I Bruchhaus, T Burmester, ... Molecular microbiology 97 (2), 301-314, 2015 | 52 | 2015 |
| Parasite infection of public databases: a data mining approach to identify apicomplexan contaminations in animal genome and transcriptome assemblies J Borner, T Burmester BMC genomics 18 (1), 100, 2017 | 36 | 2017 |
| Metatranscriptomics yields new genomic resources and sensitive detection of infections for diverse blood parasites SC Galen, J Borner, JL Williamson, CC Witt, SL Perkins Molecular Ecology Resources 20 (1), 14-28, 2020 | 29 | 2020 |
| Evaluating the hypoxia response of ruffe and flounder gills by a combined proteome and transcriptome approach J Tiedke, J Borner, H Beeck, M Kwiatkowski, H Schmidt, R Thiel, ... PLoS One 10 (8), e0135911, 2015 | 24 | 2015 |
| Oligonucleotide primers for targeted amplification of single-copy nuclear genes in apocritan Hymenoptera G Hartig, RS Peters, J Borner, C Etzbauer, B Misof, O Niehuis PLoS One 7 (6), e39826, 2012 | 19 | 2012 |
| Phylogeny of the chelicerates: morphological and molecular evidence J Dunlop, J Borner, T Burmester Deep Metazoan Phylogeny: The Backbone of the Tree of Life. Berlin: Walter de …, 2014 | 14 | 2014 |
| Evolution of host specificity by malaria parasites through altered mechanisms controlling genome maintenance MC Siao, J Borner, SL Perkins, KW Deitsch, LA Kirkman Mbio 11 (2), 10.1128/mbio. 03272-19, 2020 | 13 | 2020 |
| Comparative transcriptomics of the Djungarian hamster hypothalamus during short photoperiod acclimation and spontaneous torpor E Haugg, J Borner, V Diedrich, A Herwig FEBS Open Bio 12 (2), 443-459, 2022 | 10 | 2022 |
| Phylogenomics from transcriptomic “bycatch” clarify the origins and diversity of avian trypanosomes in North America SC Galen, J Borner, SL Perkins, JD Weckstein Plos One 15 (10), e0240062, 2020 | 10 | 2020 |
| Comparative transcriptomics of the garden dormouse hypothalamus during hibernation E Haugg, J Borner, G Stalder, A Kübber‐Heiss, S Giroud, A Herwig FEBS Open bio 14 (2), 241-257, 2024 | 2 | 2024 |
| Molecular phylogenetic analyses of Ecdysozoa and Haemosporida J Borner Staats-und Universitätsbibliothek Hamburg Carl von Ossietzky, 2017 | | 2017 |
