| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 7821 | 2013 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 795 | 2013 |
| On the optimal trimming of high-throughput mRNA sequence data MD MacManes Frontiers in genetics 5, 13, 2014 | 230 | 2014 |
| Comparative genomics explains the evolutionary success of reef-forming corals D Bhattacharya, S Agrawal, M Aranda, S Baumgarten, M Belcaid, ... eLife, 2016 | 185 | 2016 |
| Museum genomics: low‐cost and high‐accuracy genetic data from historical specimens KC Rowe, S Singhal, MD Macmanes, JF Ayroles, TL Morelli, EM Rubidge, ... Molecular Ecology Resources 11 (6), 1082-1092, 2011 | 155 | 2011 |
| Dynamic pigmentary and structural coloration within cephalopod chromatophore organs TL Williams, SL Senft, J Yeo, FJ Martín-Martínez, AM Kuzirian, CA Martin, ... Nature communications 10 (1), 1004, 2019 | 132 | 2019 |
| The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly MD MacManes PeerJ 6, e5428, 2018 | 112 | 2018 |
| Genomic takeover by transposable elements in the strawberry poison frog RL Rogers, L Zhou, C Chu, R Márquez, A Corl, T Linderoth, L Freeborn, ... Molecular Biology and Evolution 35 (12), 2913-2927, 2018 | 67 | 2018 |
| A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses DR O'Rourke, NA Bokulich, MA Jusino, MD MacManes, JT Foster Ecology and Evolution 10 (18), 9721-9739, 2020 | 59 | 2020 |
| Widespread patterns of sexually dimorphic gene expression in an avian hypothalamic–pituitary–gonadal (HPG) axis MD MacManes, SH Austin, AS Lang, A Booth, V Farrar, RM Calisi Scientific reports 7 (1), 45125, 2017 | 52 | 2017 |
| Improving transcriptome assembly through error correction of high-throughput sequence reads MD MacManes, MB Eisen PeerJ 1, e113, 2013 | 52 | 2013 |
| PALADIN: protein alignment for functional profiling whole metagenome shotgun data A Westbrook, J Ramsdell, T Schuelke, L Normington, RD Bergeron, ... Bioinformatics 33 (10), 1473-1478, 2017 | 48 | 2017 |
| Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury MD MacManes American Journal of Physiology-Renal Physiology 313 (2), F262-F272, 2017 | 40 | 2017 |
| Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent A Tigano, JP Colella, MD MacManes Molecular ecology 29 (7), 1300-1314, 2020 | 39 | 2020 |
| Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus MD MacManes, MB Eisen PeerJ 2, e642, 2014 | 39 | 2014 |
| Establishing evidenced-based best practice for the de novo assembly and evaluation of transcriptomes from non-model organisms MD MacManes BioRxiv, 035642, 2015 | 38* | 2015 |
| Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus AMM Stuckert, E Moore, KP Coyle, I Davison, MD MacManes, R Roberts, ... BMC Evolutionary Biology 19, 1-15, 2019 | 36 | 2019 |
| Isolation and characterization of polymorphic microsatellite loci from Octodon degus YF Quan, MD Macmanes, LA Ebensperger, EA Lacey, LD Hayes Molecular Ecology Resources 9 (3), 999-1001, 2009 | 33 | 2009 |
| Brain transcriptional profiles of male alternative reproductive tactics and females in bluegill sunfish CG Partridge, MD MacManes, R Knapp, BD Neff PLoS One 11 (12), e0167509, 2016 | 32 | 2016 |
| The social brain: transcriptome assembly and characterization of the hippocampus from a social subterranean rodent, the colonial tuco-tuco (Ctenomys sociabilis) MD MacManes, EA Lacey Public Library of Science 7 (9), e45524, 2012 | 28 | 2012 |
Manfred GrabherrAssociate Professor, Inland Norway University of Applied Sciences在 inn.no 的电子邮件经过验证
