Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 149 | 2021 |
SARS-CoV-2 Causes Severe Epithelial Inflammation and Barrier Dysfunction S Deinhardt-Emmer, S Böttcher, C Häring, L Giebeler, A Henke, R Zell, ... Journal of Virology 95 (10), e00110-21, 2021 | 90 | 2021 |
In silico serine β-lactamases analysis reveals a huge potential resistome in environmental and pathogenic species C Brandt, SD Braun, C Stein, P Slickers, R Ehricht, MW Pletz, ... Scientific reports 7 (1), 43232, 2017 | 68 | 2017 |
The bigger picture: the history of antibiotics and antimicrobial resistance displayed by scientometric data C Brandt, O Makarewicz, T Fischer, C Stein, Y Pfeifer, G Werner, MW Pletz International journal of antimicrobial agents 44 (5), 424-430, 2014 | 60 | 2014 |
ESBL colonization and acquisition in a hospital population: The molecular epidemiology and transmission of resistance genes S Hagel, O Makarewicz, A Hartung, D Weiß, C Stein, C Brandt, ... PloS one 14 (1), e0208505, 2019 | 58 | 2019 |
A Nosocomial Foodborne Outbreak of a VIM Carbapenemase-Expressing Citrobacter freundii MW Pletz, A Wollny, UH Dobermann, J Rödel, S Neubauer, C Stein, ... Clinical Infectious Diseases 67 (1), 58-64, 2018 | 53 | 2018 |
Severe clinical relapse in an immunocompromised host with persistent SARS-CoV-2 infection PA Reuken, A Stallmach, MW Pletz, C Brandt, N Andreas, S Hahnfeld, ... Leukemia 35 (3), 920-923, 2021 | 45 | 2021 |
Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore’s adaptive sequencing M Marquet, J Zöllkau, J Pastuschek, A Viehweger, E Schleußner, ... Scientific reports 12 (1), 4000, 2022 | 42 | 2022 |
poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing C Brandt, S Krautwurst, R Spott, M Lohde, M Jundzill, M Marquet, ... Frontiers in Genetics 12, 711437, 2021 | 37 | 2021 |
Assessing genetic diversity and similarity of 435 KPC-carrying plasmids C Brandt, A Viehweger, A Singh, MW Pletz, D Wibberg, J Kalinowski, ... Scientific reports 9 (1), 11223, 2019 | 37 | 2019 |
Whole genome sequencing of 39 invasive Streptococcus pneumoniae sequence type 199 isolates revealed switches from serotype 19A to 15B O Makarewicz, M Lucas, C Brandt, L Herrmann, A Albersmeier, C Rückert, ... PLoS One 12 (1), e0169370, 2017 | 31 | 2017 |
Use of MALDI-TOF mass spectrometry to detect nosocomial outbreaks of Serratia marcescens and Citrobacter freundii J Rödel, A Mellmann, C Stein, M Alexi, F Kipp, B Edel, K Dawczynski, ... European Journal of Clinical Microbiology & Infectious Diseases 38, 581-591, 2019 | 29 | 2019 |
Core genome multilocus sequence typing scheme for improved characterization and epidemiological surveillance of pathogenic Brucella MY Abdel-Glil, P Thomas, C Brandt, F Melzer, A Subbaiyan, P Chaudhuri, ... Journal of clinical microbiology 60 (8), e00311-22, 2022 | 24 | 2022 |
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN) R Van Damme, M Hölzer, A Viehweger, B Müller, E Bongcam-Rudloff, ... PLoS computational biology 17 (2), e1008716, 2021 | 24 | 2021 |
Abundance tracking by long-read nanopore sequencing of complex microbial communities in samples from 20 different biogas/wastewater plants C Brandt, E Bongcam-Rudloff, B Müller Applied Sciences 10 (21), 7518, 2020 | 24 | 2020 |
What the Phage: a scalable workflow for the identification and analysis of phage sequences M Marquet, M Hölzer, MW Pletz, A Viehweger, O Makarewicz, R Ehricht, ... Gigascience 11, giac110, 2022 | 23 | 2022 |
Spatio-Temporal Distribution of Acinetobacter baumannii in Germany—A Comprehensive Systematic Review of Studies on Resistance Development in Humans … G Wareth, C Brandt, LD Sprague, H Neubauer, MW Pletz Microorganisms 8 (3), 375, 2020 | 22 | 2020 |
Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14 GC Martín-Hernández, B Müller, M Chmielarz, C Brandt, M Hölzer, ... Genomics 113 (6), 4022-4027, 2021 | 16 | 2021 |
Mutagenesis of the CTX-M-type ESBL—is MIC-guided treatment according to the new EUCAST recommendations a safe approach? JM Costa Ramos, C Stein, Y Pfeifer, C Brandt, MW Pletz, O Makarewicz Journal of Antimicrobial Chemotherapy 70 (9), 2528-2535, 2015 | 16 | 2015 |
Phage genome diversity in a biogas-producing microbiome analyzed by Illumina and Nanopore GridION sequencing K Willenbücher, D Wibberg, L Huang, M Conrady, P Ramm, J Gätcke, ... Microorganisms 10 (2), 368, 2022 | 14 | 2022 |