| SDN2GO: an integrated deep learning model for protein function prediction Y Cai, J Wang, L Deng Frontiers in bioengineering and biotechnology 8, 391, 2020 | 60 | 2020 |
| Predicting gene ontology function of human MicroRNAs by integrating multiple networks L Deng, J Wang, J Zhang Frontiers in genetics 10, 3, 2019 | 33 | 2019 |
| Deep learning models for disease-associated circRNA prediction: a review Y Chen, J Wang, C Wang, M Liu, Q Zou Briefings in bioinformatics 23 (6), bbac364, 2022 | 28 | 2022 |
| A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data J Wang, Q Zou, C Lin Briefings in Bioinformatics 23 (1), bbab345, 2022 | 23 | 2022 |
| Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model J Wang, Y Chen, Q Zou PLoS Genetics 19 (9), e1010942, 2023 | 11 | 2023 |
| DeepciRGO: functional prediction of circular RNAs through hierarchical deep neural networks using heterogeneous network features L Deng, W Lin, J Wang, J Zhang BMC bioinformatics 21, 1-18, 2020 | 10 | 2020 |
| Predicting miRNA-disease associations using a hybrid feature representation in the heterogeneous network M Liu, J Yang, J Wang, L Deng BMC Medical Genomics 13, 1-11, 2020 | 10 | 2020 |
| Nabe: an energetic database of amino acid mutations in protein–nucleic acid binding interfaces J Liu, S Liu, C Liu, Y Zhang, Y Pan, Z Wang, J Wang, T Wen, L Deng Database 2021, baab050, 2021 | 9 | 2021 |
| Deepmir2go: Inferring functions of human micrornas using a deep multi-label classification model J Wang, J Zhang, Y Cai, L Deng International journal of molecular sciences 20 (23), 6046, 2019 | 9 | 2019 |
| Comparative Genomics and Functional Genomics Analysis in Plants J Wang, Y Chen, Q Zou International Journal of Molecular Sciences 24 (7), 6539, 2023 | | 2023 |
