Robustness and compensation of information transmission of signaling pathways S Uda, TH Saito, T Kudo, T Kokaji, T Tsuchiya, H Kubota, Y Komori, ... Science 341 (6145), 558-561, 2013 | 158 | 2013 |
Trans-omic analysis reveals selective responses to induced and basal insulin across signaling, transcriptional, and metabolic networks K Kawata, A Hatano, K Yugi, H Kubota, T Sano, M Fujii, Y Tomizawa, ... IScience 7, 212-229, 2018 | 37 | 2018 |
Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle R Egami, T Kokaji, A Hatano, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ... IScience 24 (3), 102217, 2021 | 19 | 2021 |
Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity T Kokaji, A Hatano, Y Ito, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ... Science Signaling 13 (660), eaaz1236, 2020 | 19 | 2020 |
Multi-omics-based label-free metabolic flux inference reveals obesity-associated dysregulatory mechanisms in liver glucose metabolism S Uematsu, S Ohno, KY Tanaka, A Hatano, T Kokaji, Y Ito, H Kubota, ... Iscience 25 (2), 103787, 2022 | 10 | 2022 |
Reconstruction of global regulatory network from signaling to cellular functions using phosphoproteomic data K Kawata, K Yugi, A Hatano, T Kokaji, Y Tomizawa, M Fujii, S Uda, ... Genes to Cells 24 (1), 82-93, 2019 | 6 | 2019 |
Trans-omics analysis of insulin action reveals a cell growth subnetwork which co-regulates anabolic processes A Terakawa, Y Hu, T Kokaji, K Yugi, K Morita, S Ohno, Y Pan, Y Bai, ... Iscience 25 (5), 104231, 2022 | 4 | 2022 |
Acquisition of neural fate by combination of BMP blockade and chromatin modification ALC Ong, T Kokaji, A Kishi, Y Takihara, T Shinozuka, R Shimamoto, ... Iscience 26 (10), 2023 | 2 | 2023 |
DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle H Maehara, T Kokaji, A Hatano, Y Suzuki, M Matsumoto, KI Nakayama, ... Scientific Reports 13 (1), 19118, 2023 | 1 | 2023 |
Comparison of hepatic responses to glucose perturbation between healthy and obese mice based on the edge type of network structures Y Ito, S Uda, T Kokaji, A Hirayama, T Soga, Y Suzuki, S Kuroda, H Kubota Scientific Reports 13 (1), 4758, 2023 | 1 | 2023 |
Optogenetic decoding of Akt2-regulated metabolic signaling pathways in skeletal muscle cells using transomics analysis G Kawamura, T Kokaji, K Kawata, Y Sekine, Y Suzuki, T Soga, Y Ueda, ... Science Signaling 16 (773), eabn0782, 2023 | 1 | 2023 |
Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity Y Bai, K Morita, T Kokaji, A Hatano, S Ohno, R Egami, Y Pan, D Li, K Yugi, ... Iscience 27 (3), 2024 | | 2024 |
Structural robustness and temporal vulnerability of the starvation-responsive metabolic network in liver of healthy and obese mice K Morita, A Hatano, T Kokaji, H Sugimoto, T Tsuchiya, H Ozaki, R Egami, ... bioRxiv, 2024 | | 2024 |
In vivo transomic analyses of glucose-responsive metabolism in skeletal muscle reveal core differences between the healthy and obese states T Kokaji, M Eto, A Hatano, K Yugi, K Morita, S Ohno, M Fujii, K Hironaka, ... Scientific reports 12 (1), 1-19, 2022 | | 2022 |
Construction of an inter-organ transomic network for whole-body metabolism T Kokaji, S Kuroda Current Opinion in Endocrine and Metabolic Research 25, 100361, 2022 | | 2022 |