TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks M Hamed, C Spaniol, M Nazarieh, V Helms Nucleic acids research 43 (W1), W283-W288, 2015 | 58 | 2015 |
Identification of key player genes in gene regulatory networks M Nazarieh, A Wiese, T Will, M Hamed, V Helms BMC Systems Biology 10, 1-12, 2016 | 52 | 2016 |
Human profilin 1 is a negative regulator of CTL mediated cell‐killing and migration R Schoppmeyer, R Zhao, H Cheng, M Hamed, C Liu, X Zhou, ... European journal of immunology 47 (9), 1562-1572, 2017 | 47 | 2017 |
Integrative network-based approach identifies key genetic elements in breast invasive carcinoma M Hamed, C Spaniol, A Zapp, V Helms BMC genomics 16, 1-14, 2015 | 38 | 2015 |
A radiogenomic approach for decoding molecular mechanisms underlying tumor progression in prostate cancer S Fischer, M Tahoun, B Klaan, KM Thierfelder, MA Weber, BJ Krause, ... Cancers 11 (9), 1293, 2019 | 28 | 2019 |
Bystander cells enhance NK cytotoxic efficiency by reducing search time X Zhou, R Zhao, K Schwarz, M Mangeat, EC Schwarz, M Hamed, ... Scientific reports 7 (1), 44357, 2017 | 26 | 2017 |
Combined Casein Kinase II inhibition and epigenetic modulation in acute B-lymphoblastic leukemia A Richter, C Roolf, M Hamed, YS Gladbach, S Sender, C Konkolefski, ... BMC cancer 19, 1-11, 2019 | 23 | 2019 |
FocusHeuristics–expression-data-driven network optimization and disease gene prediction M Ernst, Y Du, G Warsow, M Hamed, N Endlich, K Endlich, ... Scientific Reports 7 (1), 42638, 2017 | 21 | 2017 |
Cellular functions of genetically imprinted genes in human and mouse as annotated in the gene ontology M Hamed, S Ismael, M Paulsen, V Helms PloS one 7 (11), e50285, 2012 | 20 | 2012 |
Healthspan pathway maps in C. elegans and humans highlight transcription, proliferation/biosynthesis and lipids S Möller, N Saul, AA Cohen, R Köhling, S Sender, HM Escobar, ... Aging (Albany NY) 12 (13), 12534, 2020 | 18 | 2020 |
Cellular vaccination of MLH1−/− mice – an immunotherapeutic proof of concept study C Maletzki, YS Gladbach, M Hamed, G Fuellen, ML Semmler, J Stenzel, ... Oncoimmunology 7 (3), e1408748, 2018 | 16 | 2018 |
Whole genome sequence typing and microarray profiling of nasal and blood stream methicillin-resistant Staphylococcus aureus isolates: Clues to phylogeny and invasiveness M Hamed, DP Nitsche-Schmitz, U Ruffing, M Steglich, J Dordel, D Nguyen, ... Infection, Genetics and Evolution 36, 475-482, 2015 | 16 | 2015 |
Unraveling the Heterogeneous Mutational Signature of Spontaneously Developing Tumors in MLH1−/− Mice YS Gladbach, L Wiegele, M Hamed, AM Merkenschläger, G Fuellen, ... Cancers 11 (10), 1485, 2019 | 11 | 2019 |
BicAT_Plus: An automatic comparative tool for bi/clustering of gene expression data obtained using microarrays FM Al-Akwaa, MH Ali, YM Kadah 2009 National Radio Science Conference, 1-8, 2009 | 10 | 2009 |
TGF-ß1 Induces Changes in the Energy Metabolism of White Adipose Tissue-Derived Human Adult Mesenchymal Stem/Stromal Cells In Vitro O Hahn, LC Ingwersen, A Soliman, M Hamed, G Fuellen, M Wolfien, ... Metabolites 10 (2), 59, 2020 | 9 | 2020 |
TFmiR2: constructing and analyzing disease-, tissue-and process-specific transcription factor and microRNA co-regulatory networks M Nazarieh, M Hamed, C Spaniol, T Will, V Helms Bioinformatics 36 (7), 2300-2302, 2020 | 8 | 2020 |
Identification of novel diabetes impaired miRNA-transcription factor co-regulatory networks in bone marrow-derived Lin-/VEGF-R2+ endothelial progenitor cells MR Irhimeh, M Hamed, D Barthelmes, Y Gladbach, V Helms, W Shen, ... Plos one 13 (7), e0200194, 2018 | 8 | 2018 |
Linking hematopoietic differentiation to co-expressed sets of pluripotency-associated and imprinted genes and to regulatory microRNA-transcription factor motifs M Hamed, J Trumm, C Spaniol, R Sethi, MR Irhimeh, G Fuellen, ... PLoS One 12 (1), e0166852, 2017 | 8 | 2017 |
A workflow for the integrative transcriptomic description of molecular pathology and the suggestion of normalizing compounds, exemplified by Parkinson’s disease M Hamed, Y Gladbach, S Möller, S Fischer, M Ernst, S Struckmann, ... Scientific Reports 8 (1), 7937, 2018 | 7 | 2018 |
Towards biomarkers for outcomes after pancreatic ductal adenocarcinoma and ischaemic stroke, with focus on (co)-morbidity and ageing/cellular senescence (SASKit): protocol for … L Henze, U Walter, HM Escobar, C Junghanss, R Jaster, R Köhling, ... BMJ open 10 (12), e039560, 2020 | 5 | 2020 |