The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ... EBioMedicine 37, 410-416, 2018 | 125 | 2018 |
Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018 | 109 | 2018 |
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics D Kühnert, R Kouyos, G Shirreff, J Pečerska, AU Scherrer, J Böni, S Yerly, ... PLoS pathogens 14 (2), e1006895, 2018 | 72 | 2018 |
Quantifying transmission fitness costs of multi-drug resistant tuberculosis J Pečerska, D Kühnert, CJ Meehan, M Coscollá, BC De Jong, S Gagneux, ... Epidemics 36, 100471, 2021 | 17 | 2021 |
TRAL: tandem repeat annotation library E Schaper, A Korsunsky, J Pečerska, A Messina, R Murri, H Stockinger, ... Bioinformatics 31 (18), 3051-3053, 2015 | 17 | 2015 |
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine 37: 410–416 CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ... | 10 | 2018 |
Transmission of hepatitis b and d viruses in an African rural community CA Pinho-Nascimento, MW Bratschi, R Höfer, CC Soares, L Warryn, ... Msystems 3 (5), 10.1128/msystems. 00120-18, 2018 | 7 | 2018 |
ARPIP: ancestral sequence reconstruction with insertions and deletions under the Poisson Indel process G Jowkar, J Pečerska, M Maiolo, M Gil, M Anisimova Systematic biology 72 (2), 307-318, 2023 | 4 | 2023 |
Please Mind the Gap: Indel-Aware Parsimony for Fast and Accurate Ancestral Sequence Reconstruction and Multiple Sequence Alignment including Long Indels C Iglhaut, J Pečerska, M Gil, M Anisimova Molecular Biology and Evolution, msae109, 2024 | 1 | 2024 |
Joint alignment and tree inference J Pečerska, M Gil, M Anisimova bioRxiv, 2021.09. 28.462230, 2021 | 1 | 2021 |
Mathematical Models for the Epidemiology and Evolution of Mycobacterium tuberculosis J Pečerska, J Wood, MM Tanaka, T Stadler Strain Variation in the Mycobacterium tuberculosis Complex: Its Role in …, 2017 | 1 | 2017 |
Decoding Genomes: From Sequences to Phylodynamics T Stadler, C Magnus, T Vaughan, J Barido-Sottani, V Bošková, J Huisman, ... | | 2024 |
Resistance is futile: taming the beasts of antibiotic resistance in Mycobacterium tuberculosis J Pečerska ETH Zurich, 2019 | | 2019 |
ETH Library CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ... | | 2018 |
Large-scale Prediction and Functional Analysis of Tandem Repeats in Proteomes of Diverse Organisms J Pečerska Center of Economic Research at ETH Zurich, 2015 | | 2015 |