| Disordered protein-graphene oxide co-assembly and supramolecular biofabrication of functional fluidic devices Y Wu, BO Okesola, J Xu, I Korotkin, A Berardo, I Corridori, ... Nature communications 11 (1), 1182, 2020 | 58 | 2020 |
| All-atom molecular dynamics simulations of entire virus capsid reveal the role of ion distribution in capsid’s stability E Tarasova, V Farafonov, R Khayat, N Okimoto, TS Komatsu, M Taiji, ... The journal of physical chemistry letters 8 (4), 779-784, 2017 | 50 | 2017 |
| Character of Localization and Microenvironment of Solvatochromic Reichardt’s Betaine Dye in Sodium n-Dodecyl Sulfate and Cetyltrimethylammonium Bromide … VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan Langmuir 33 (33), 8342-8352, 2017 | 30 | 2017 |
| Developing and validating a set of all-atom potential models for sodium dodecyl sulfate VS Farafonov, AV Lebed Journal of Chemical Theory and Computation 13 (6), 2742-2750, 2017 | 30 | 2017 |
| Complete virus capsid at all-atom resolution: Simulations using molecular dynamics and hybrid molecular dynamics/hydrodynamics methods reveal semipermeable membrane function E Tarasova, I Korotkin, V Farafonov, S Karabasov, D Nerukh Journal of Molecular Liquids 245, 109-114, 2017 | 29 | 2017 |
| A hybrid molecular dynamics/fluctuating hydrodynamics method for modelling liquids at multiple scales in space and time I Korotkin, S Karabasov, D Nerukh, A Markesteijn, A Scukins, V Farafonov, ... The Journal of Chemical Physics 143 (1), 2015 | 26 | 2015 |
| MS2 bacteriophage capsid studied using all-atom molecular dynamics VS Farafonov, D Nerukh Interface Focus 9 (3), 20180081, 2019 | 25 | 2019 |
| Two-phase flow analogy as an effective boundary condition for modelling liquids at atomistic resolution I Korotkin, D Nerukh, E Tarasova, V Farafonov, S Karabasov Journal of Computational Science 17, 446-456, 2016 | 19 | 2016 |
| In search of an optimal acid-base indicator for examining surfactant micelles: Spectrophotometric studies and molecular dynamics simulations NO Mchedlov-Petrossyan, VS Farafonov, TA Cheipesh, SV Shekhovtsov, ... Colloids and Surfaces A: Physicochemical and Engineering Aspects 565, 97-107, 2019 | 15 | 2019 |
| Molecular dynamics simulation study of cetylpyridinum chloride and cetyltrimethylammonium bromide micelles VS Farafonov, AV Lebed Kharkiv University Bulletin. Chemical Series, 25-30, 2016 | 15 | 2016 |
| Graphene oxide of extra high oxidation: a wafer for loading guest molecules AOE Abdelhalim, VV Sharoyko, SV Ageev, VS Farafonov, DA Nerukh, ... The Journal of Physical Chemistry Letters 12 (41), 10015-10024, 2021 | 14 | 2021 |
| Association of novel monomethine cyanine dyes with bacteriophage MS2: A fluorescence study K Vus, U Tarabara, Z Balklava, D Nerukh, M Stich, A Laguta, ... Journal of Molecular Liquids 302, 112569, 2020 | 14 | 2020 |
| In Vitro and In Silico Investigation of Water-Soluble Fullerenol C60(OH)24: Bioactivity and Biocompatibility VV Sharoyko, NR Iamalova, SV Ageev, AA Meshcheriakov, GO Iurev, ... The Journal of Physical Chemistry B 125 (32), 9197-9212, 2021 | 12 | 2021 |
| Estimation of Nanoparticle’s Surface Electrostatic Potential in Solution Using Acid–Base Molecular Probes. III. Experimental Hydrophobicity/Hydrophilicity and Charge … N Vodolazkaya, M Nikolskaya, A Laguta, V Farafonov, Z Balklava, M Stich, ... The Journal of Physical Chemistry B 126 (41), 8166-8176, 2022 | 11 | 2022 |
| Details of charge distribution in stable viral capsid E Tarasova, V Farafonov, M Taiji, D Nerukh Journal of Molecular Liquids 265, 585-591, 2018 | 11 | 2018 |
| Examining surfactant micelles via acid-base indicators: Revisiting the pioneering Hartley–Roe 1940 study by molecular dynamics modeling NO Mchedlov-Petrossyan, VS Farafonov, AV Lebed Journal of Molecular Liquids 264, 683-690, 2018 | 11 | 2018 |
| Solvatochromic betaine dyes of different hydrophobicity in ionic surfactant micelles: Molecular dynamics modeling of location character VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan Colloids and Surfaces A: Physicochemical and Engineering Aspects 538, 583-592, 2018 | 9 | 2018 |
| Protein–ligand dissociation rate constant from all-atom simulation E Maximova, EB Postnikov, AI Lavrova, V Farafonov, D Nerukh The Journal of Physical Chemistry Letters 12 (43), 10631-10636, 2021 | 7 | 2021 |
| Computing pKa Shifts Using Traditional Molecular Dynamics: Example of Acid–Base Indicator Dyes in Organized Solutions VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan Journal of Chemical Theory and Computation 16 (9), 5852-5865, 2020 | 7 | 2020 |
| Solvatochromic Reichardt’s dye in micelles of sodium cetyl sulfate: MD modeling of location character and hydration VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan Kharkiv University Bulletin. Chemical Series, 5-11, 2017 | 6 | 2017 |
