| Unravelling the diversity of grapevine microbiome C Pinto, D Pinho, S Sousa, M Pinheiro, C Egas, A C. Gomes PLoS One 9 (1), e85622, 2014 | 292 | 2014 |
| Metabarcoding is powerful yet still blind: a comparative analysis of morphological and molecular surveys of seagrass communities DA Cowart, M Pinheiro, O Mouchel, M Maguer, J Grall, J Miné, ... PLoS One 10 (2), e0117562, 2015 | 231 | 2015 |
| Wine fermentation microbiome: a landscape from different Portuguese wine appellations C Pinto, D Pinho, R Cardoso, V Custódio, J Fernandes, S Sousa, ... Frontiers in microbiology 6, 905, 2015 | 207 | 2015 |
| High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus R Bettencourt, M Pinheiro, C Egas, P Gomes, M Afonso, T Shank, ... BMC genomics 11, 1-17, 2010 | 152 | 2010 |
| Comparative context analysis of codon pairs on an ORFeome scale G Moura, M Pinheiro, R Silva, I Miranda, V Afreixo, G Dias, A Freitas, ... Genome biology 6, 1-14, 2005 | 137 | 2005 |
| Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure G Moura, M Pinheiro, J Arrais, AC Gomes, L Carreto, A Freitas, JL Oliveira, ... PLoS One 2 (9), e847, 2007 | 123 | 2007 |
| Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation M Pinto, V Borges, M Antelo, M Pinheiro, A Nunes, J Azevedo, ... Nature microbiology 2 (1), 1-11, 2016 | 106 | 2016 |
| INSaFLU: an automated open web-based bioinformatics suite “from-reads” for influenza whole-genome-sequencing-based surveillance V Borges, M Pinheiro, P Pechirra, R Guiomar, JP Gomes Genome Medicine 10, 1-13, 2018 | 73 | 2018 |
| Plasmodium knowlesi genome sequences from clinical isolates reveal extensive genomic dimorphism MM Pinheiro, MA Ahmed, SB Millar, T Sanderson, TD Otto, WC Lu, ... PLoS One 10 (4), e0121303, 2015 | 71 | 2015 |
| Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening CS Santos, M Pinheiro, AI Silva, C Egas, MW Vasconcelos BMC genomics 13, 1-16, 2012 | 71 | 2012 |
| Pseudomonas aeruginosa intensive care unit outbreak: winnowing of transmissions with molecular and genomic typing BJ Parcell, K Oravcova, M Pinheiro, MTG Holden, G Phillips, JF Turton, ... Journal of Hospital Infection 98 (3), 282-288, 2018 | 62 | 2018 |
| Disease Progression in Plasmodium knowlesi Malaria Is Linked to Variation in Invasion Gene Family Members AM Ahmed, MM Pinheiro, PC Divis, A Siner, R Zainudin, IT Wong, CW Lu, ... PLoS neglected tropical diseases 8 (8), e3086, 2014 | 61 | 2014 |
| Species-specific codon context rules unveil non-neutrality effects of synonymous mutations GR Moura, M Pinheiro, A Freitas, JL Oliveira, JC Frommlet, L Carreto, ... PloS one 6 (10), e26817, 2011 | 54 | 2011 |
| Comparative transcriptomic analysis of male and female flowers of monoecious Quercus suber M Rocheta, R Sobral, J Magalhães, MI Amorim, T Ribeiro, M Pinheiro, ... Frontiers in plant science 5, 599, 2014 | 51 | 2014 |
| A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing JB Pereira-Leal, IA Abreu, CS Alabaça, MH Almeida, P Almeida, ... BMC genomics 15, 1-14, 2014 | 50 | 2014 |
| m5U54 tRNA Hypomodification by Lack of TRMT2A Drives the Generation of tRNA-Derived Small RNAs M Pereira, DR Ribeiro, MM Pinheiro, M Ferreira, S Kellner, AR Soares International Journal of Molecular Sciences 22 (6), 2941, 2021 | 45 | 2021 |
| Helicobacter pullorum isolated from fresh chicken meat: antibiotic resistance and genomic traits of an emerging foodborne pathogen V Borges, A Santos, CB Correia, M Saraiva, A Ménard, L Vieira, ... Applied and environmental microbiology 81 (23), 8155-8163, 2015 | 41 | 2015 |
| Statistical, computational and visualization methodologies to unveil gene primary structure features M Pinheiro, V Afreixo, G Moura, A Freitas, MAS Santos, JL Oliveira Methods of Information in Medicine 45 (02), 163-168, 2006 | 39 | 2006 |
| Assessment of the geographic origins of pinewood nematode isolates via single nucleotide polymorphism in effector genes J Figueiredo, MJ Simoes, P Gomes, C Barroso, D Pinho, L Conceicao, ... PLoS One 8 (12), e83542, 2013 | 38 | 2013 |
| The transcriptome of Bathymodiolus azoricus gill reveals expression of genes from endosymbionts and free-living deep-sea bacteria C Egas, M Pinheiro, P Gomes, C Barroso, R Bettencourt Marine drugs 10 (8), 1765-1783, 2012 | 32 | 2012 |
