rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development SF Stoddard, BJ Smith, R Hein, BRK Roller, TM Schmidt Nucleic acids research 43 (D1), D593-D598, 2015 | 946 | 2015 |
Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice BJ Smith, RA Miller, AC Ericsson, DC Harrison, R Strong, TM Schmidt BMC Microbiology 19 (130), 1-16, 2019 | 264 | 2019 |
Muribaculaceae genomes assembled from metagenomes suggest genetic drivers of differential response to acarbose treatment in mice BJ Smith, RA Miller, TM Schmidt mSphere 6 (6), 2021 | 72 | 2021 |
Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis BJ Smith, Y Piceno, M Zydek, B Zhang, LA Syriani, JP Terdiman, ... Scientific Reports 12 (1), 1-14, 2022 | 22 | 2022 |
Scalable microbial strain inference in metagenomic data using StrainFacts BJ Smith, X Li, ZJ Shi, A Abate, KS Pollard Frontiers in Bioinformatics 2 (867386), 2022 | 9 | 2022 |
36 ANTIBIOTIC PRETREATMENT PRIOR TO FECAL MICROBIOTA TRANSPLANTATION INCREASES RATES OF REMISSION IN PATIENTS WITH MILD TO MODERATE ULCERATIVE COLITIS: RESULTS FROM A PILOT … N El-Nachef, B Smith, Y Piceno, M Zydek, L Syriani, JP Terdiman, A Ma, ... Gastroenterology 158 (6), s-14, 2020 | 2 | 2020 |
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC BJ Smith, C Zhao, V Dubinkina, X Jin, J Moltzau-Anderson, K Pollard bioRxiv, 2024.04. 10.588779, 2024 | 1 | 2024 |
Sustained mucosal colonization and fecal metabolic dysfunction by Bacteroides associates with fecal microbial transplant failure in ulcerative colitis patients B Zhang, KM Magnaye, E Stryker, J Moltzau-Anderson, CE Porsche, ... Scientific Reports 14 (1), 18558, 2024 | | 2024 |
Exclusive Enteral Nutrition Initiates Individual Protective Microbiome Changes to Induce Remission in Pediatric Crohn’s Disease D Haecker, K Siebert, BJ Smith, N Koehler, A Mahapatra, H Heimes, ... medRxiv, 2023.12. 21.23300351, 2023 | | 2023 |
Genotyping Microbial Communities with MIDAS2: From Metagenomic Reads to Allele Tables C Zhao, M Goldman, BJ Smith, KS Pollard Current Protocols, 2022 | | 2022 |
Evaluation of Le et al.: Challenges and opportunities for using data to understand equitability in science BJ Smith, KS Pollard Cell Systems 12 (9), 839-841, 2021 | | 2021 |
Integrated Analysis of the Gut Microbiota and Their Fermentation Products in Mice Treated with the Longevity Enhancing Drug Acarbose BJ Smith | | 2019 |