| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1029 | 2019 |
| Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ... Nature biotechnology 35 (1), 81-89, 2017 | 721 | 2017 |
| Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele Frontiers in genetics 6, 148, 2015 | 715 | 2015 |
| The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019 | 319 | 2019 |
| Modeling metabolism of the human gut microbiome S Magnúsdóttir, I Thiele Current opinion in biotechnology 51, 90-96, 2018 | 134 | 2018 |
| The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities F Baldini, A Heinken, L Heirendt, S Magnusdottir, RMT Fleming, I Thiele Bioinformatics 35 (13), 2332-2334, 2019 | 128 | 2019 |
| Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine A Heinken, J Hertel, G Acharya, DA Ravcheev, M Nyga, OE Okpala, ... Nature Biotechnology 41 (9), 1320-1331, 2023 | 90 | 2023 |
| Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires E Bauer, CC Laczny, S Magnusdottir, P Wilmes, I Thiele Microbiome 3, 1-13, 2015 | 42 | 2015 |
| AGORA2: Large scale reconstruction of the microbiome highlights wide-spread drug-metabolising capacities A Heinken, G Acharya, DA Ravcheev, J Hertel, M Nyga, OE Okpala, ... BioRxiv, 2020.11. 09.375451, 2020 | 37 | 2020 |
| Binding proteins enhance specific uptake rate by increasing the substrate–transporter encounter rate E Bosdriesz, S Magnúsdóttir, FJ Bruggeman, B Teusink, D Molenaar The FEBS Journal 282 (12), 2394-2407, 2015 | 24 | 2015 |
| DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations A Heinken, S Magnúsdóttir, RMT Fleming, I Thiele Bioinformatics 37 (21), 3974-3975, 2021 | 19 | 2021 |
| MetaboShiny: Interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data JC Wolthuis, S Magnusdottir, M Pras-Raves, M Moshiri, JJM Jans, ... Metabolomics 16, 1-6, 2020 | 17 | 2020 |
| Ablation of liver Fxr results in an increased colonic mucus barrier in mice N Ijssennagger, KS van Rooijen, S Magnúsdóttir, JMR Pittol, ... JHEP Reports 3 (5), 100344, 2021 | 11 | 2021 |
| Reply to" Challenges in modeling the human gut microbiome" S Magnusdottir, A Heinken, RMT Fleming, I Thiele Nature Biotechnology 36 (8), 686-691, 2018 | 11 | 2018 |
| Multi-country metabolic signature discovery for chicken health classification JC Wolthuis, S Magnúsdóttir, E Stigter, YF Tang, J Jans, M Gilbert, ... Metabolomics 19 (2), 9, 2023 | 4 | 2023 |
| Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in … S Magnúsdóttir, JP Saraiva, A Bartholomäus, M Soheili, RB Toscan, ... Frontiers in Microbiology 14, 1037845, 2023 | 4 | 2023 |
| Microbial protein metabolism in the monogastric gastrointestinal tract: a review KCM Lammers-Jannink, S Magnúsdóttir, WF Pellikaan, J Pluske, ... Understanding gut microbiomes as targets for improving pig gut health, 435-466, 2022 | 3 | 2022 |
| MetaboShiny-interactive processing, analysis and identification of untargeted metabolomics data JC Wolthuis, S Magnusdottir, M Pras-Raves, JJM Jans, B Burgering, ... bioRxiv, 734236, 2019 | 2 | 2019 |
| The media composition as a crucial element in high-throughput metabolic network reconstruction B Borer, S Magnúsdóttir Interface Focus 13 (2), 20220070, 2023 | 1 | 2023 |
| OPEN ACCESS EDITED BY O Moran, G Veit, F Stanke, F Stanke, ST Pallenberg, S Tamm, S Hedtfeld, ... Real-world experience with CFTR modulator therapy, 8, 2023 | | 2023 |
