A new method of RNA secondary structure prediction based on convolutional neural network and dynamic programming H Zhang, C Zhang, Z Li, C Li, X Wei, B Zhang, Y Liu Frontiers in genetics 10, 467, 2019 | 90 | 2019 |
DMfold: a novel method to predict RNA secondary structure with pseudoknots based on deep learning and improved base pair maximization principle L Wang, Y Liu, X Zhong, H Liu, C Lu, C Li, H Zhang Frontiers in genetics 10, 143, 2019 | 82 | 2019 |
Integrative analysis of dysregulated lncRNA-associated ceRNA network reveals functional lncRNAs in gastric cancer H Liu, Z Zhang, N Wu, H Guo, H Zhang, D Fan, Y Nie, Y Liu Genes 9 (6), 303, 2018 | 64 | 2018 |
Role of plant MicroRNA in cross-species regulatory networks of humans H Zhang, Y Li, Y Liu, H Liu, H Wang, W Jin, Y Zhang, C Zhang, D Xu BMC systems biology 10, 1-10, 2016 | 58 | 2016 |
Long Non-coding RNA LINC00941 as a Potential Biomarker Promotes the Proliferation and Metastasis of Gastric Cancer H Liu, N Wu, Z Zhang, XD Zhong, H Zhang, H Guo, Y Nie, Y Liu Frontiers in genetics 10, 5, 2019 | 56 | 2019 |
Identification of potential prognostic genes for neuroblastoma X Zhong, Y Liu, H Liu, Y Zhang, L Wang, H Zhang Frontiers in genetics 9, 589, 2018 | 49 | 2018 |
The H3K4 demethylase Jar1 orchestrates ROS production and expression of pathogenesis‐related genes to facilitate Botrytis cinerea virulence J Hou, HQ Feng, HW Chang, Y Liu, GH Li, S Yang, CH Sun, MZ Zhang, ... New Phytologist 225 (2), 930-947, 2020 | 35 | 2020 |
Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples Q Zhao, Y Liu, N Zhang, M Hu, H Zhang, T Joshi, D Xu PloS one 13 (6), e0187519, 2018 | 35 | 2018 |
Transcriptome analysis and functional validation reveal a novel gene, BcCGF1, that enhances fungal virulence by promoting infection‐related development and … MZ Zhang, CH Sun, Y Liu, HQ Feng, HW Chang, SN Cao, GH Li, S Yang, ... Molecular plant pathology 21 (6), 834-853, 2020 | 28 | 2020 |
Cellular components in tumor microenvironment of neuroblastoma and the prognostic value X Zhong, Y Zhang, L Wang, H Zhang, H Liu, Y Liu PeerJ 7, e8017, 2019 | 27 | 2019 |
Multitask feature learning approach for knowledge graph enhanced recommendations with RippleNet YQ Wang, LY Dong, YL Li, H Zhang Plos one 16 (5), e0251162, 2021 | 25 | 2021 |
KG2Vec: A node2vec-based vectorization model for knowledge graph YQ Wang, LY Dong, XQ Jiang, XT Ma, YL Li, H Zhang Plos one 16 (3), e0248552, 2021 | 22 | 2021 |
A Novel Deep Learning Method to Predict Lung Cancer Long-Term Survival with Biological Knowledge Incorporated Gene Expression Images and Clinical Data S Wang, H Zhang, Z Liu, Y Liu Frontiers in Genetics, 301, 2022 | 21 | 2022 |
ncRFP: a novel end-to-end method for non-coding RNAs family prediction based on deep learning L Wang, S Zheng, H Zhang, Z Qiu, X Zhong, H Liu, Y Liu IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (2 …, 2020 | 18 | 2020 |
A computational method for predicting regulation of human microRNAs on the influenza virus genome H Zhang, Z Li, Y Li, Y Liu, J Liu, X Li, T Shen, Y Duan, M Hu, D Xu BMC Systems Biology 7, 1-14, 2013 | 18 | 2013 |
ATTfold: RNA secondary structure prediction with pseudoknots based on attention mechanism Y Wang, Y Liu, S Wang, Z Liu, Y Gao, H Zhang, L Dong Frontiers in Genetics 11, 612086, 2020 | 17 | 2020 |
An enhanced multi-modal recommendation based on alternate training with knowledge graph representation Y Wang, L Dong, H Zhang, X Ma, Y Li, M Sun Ieee Access 8, 213012-213026, 2020 | 15 | 2020 |
A novel end-to-end method to predict RNA secondary structure profile based on bidirectional LSTM and residual neural network L Wang, X Zhong, S Wang, H Zhang, Y Liu BMC bioinformatics 22, 1-15, 2021 | 14 | 2021 |
Prognostic signature of immune genes and immune-related LncRNAs in neuroblastoma: a study based on geo and target datasets X Zhong, Y Tao, J Chang, Y Zhang, H Zhang, L Wang, Y Liu Frontiers in Oncology 11, 631546, 2021 | 14 | 2021 |
Research on gastric cancer’s drug-resistant gene regulatory network model Z Li, T Zhang, H Lei, L Wei, Y Liu, Y Shi, S Li, B Shen, H Guo, Z Chen, X Yi, ... Current Bioinformatics 15 (3), 225-234, 2020 | 14 | 2020 |