Regional heterogeneity in gene expression, regulation, and coherence in the frontal cortex and hippocampus across development and schizophrenia L Collado-Torres, EE Burke, A Peterson, JH Shin, RE Straub, A Rajpurohit, ... Neuron 103 (2), 203-216. e8, 2019 | 185 | 2019 |
Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs EE Burke, JG Chenoweth, JH Shin, L Collado-Torres, SK Kim, N Micali, ... Nature communications 11 (1), 462, 2020 | 120 | 2020 |
A myelin-related transcriptomic profile is shared by Pitt–Hopkins syndrome models and human autism spectrum disorder BDN Phan, JF Bohlen, BA Davis, Z Ye, HY Chen, B Mayfield, SR Sripathy, ... Nature neuroscience 23 (3), 375-385, 2020 | 94 | 2020 |
Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk AE Jaffe, DJ Hoeppner, T Saito, L Blanpain, J Ukaigwe, EE Burke, ... Nature neuroscience 23 (4), 510-519, 2020 | 84 | 2020 |
Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods C Wright, A Rajpurohit, EE Burke, C Williams, L Collado-Torres, M Kimos, ... BMC genomics 20, 1-21, 2019 | 76 | 2019 |
Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation AJ Price, L Collado-Torres, NA Ivanov, W Xia, EE Burke, JH Shin, R Tao, ... Genome biology 20, 1-20, 2019 | 68 | 2019 |
Revealing the brain's molecular architecture PsychENCODE Consortium* Science 362 (6420), 1262-1263, 2018 | 49 | 2018 |
Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways PP Zandi, AE Jaffe, FS Goes, EE Burke, L Collado-Torres, L Huuki-Myers, ... Nature neuroscience 25 (3), 381-389, 2022 | 37 | 2022 |
Analysis of the caudate nucleus transcriptome in individuals with schizophrenia highlights effects of antipsychotics and new risk genes KJM Benjamin, Q Chen, AE Jaffe, JM Stolz, L Collado-Torres, ... Nature neuroscience 25 (11), 1559-1568, 2022 | 35 | 2022 |
Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation AJ Price, T Hwang, R Tao, EE Burke, A Rajpurohit, JH Shin, TM Hyde, ... Genome research 30 (1), 1-11, 2020 | 34 | 2020 |
Establishing benchmarks for minimum competence with dry lab robotic surgery drills NY Siddiqui, ME Tarr, EJ Geller, AP Advincula, ML Galloway, IC Green, ... Journal of Minimally Invasive Gynecology 23 (4), 633-638, 2016 | 30 | 2016 |
Male obesity impacts DNA methylation reprogramming in sperm S Keyhan, E Burke, R Schrott, Z Huang, C Grenier, T Price, D Raburn, ... Clinical epigenetics 13, 1-14, 2021 | 29 | 2021 |
Developmental profile of psychiatric risk associated with voltage-gated cation channel activity NE Clifton, L Collado-Torres, EE Burke, AF Pardiñas, JC Harwood, ... Biological psychiatry 90 (6), 399-408, 2021 | 14 | 2021 |
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses NJ Eagles, EE Burke, J Leonard, BK Barry, JM Stolz, L Huuki, BDN Phan, ... BMC bioinformatics 22 (1), 224, 2021 | 14 | 2021 |
A genome‐scale DNA methylation study in women with interstitial cystitis/bladder pain syndrome MS Bradley, EE Burke, C Grenier, CL Amundsen, SK Murphy, NY Siddiqui Neurourology and urodynamics 37 (4), 1485-1493, 2018 | 13 | 2018 |
Genetic and environmental regulation of caudate nucleus transcriptome: insight into schizophrenia risk and the dopamine system KJM Benjamin, AS Feltrin, AR Barbosa, AE Jaffe, L Collado-Torres, ... medRxiv, 2020.11. 18.20230540, 2020 | 8* | 2020 |
Optimizing urine processing protocols for protein and metabolite detection NY Siddiqui, LG DuBois, L St John-Williams, TJ Will, C Grenier, E Burke, ... Journal of proteomics & bioinformatics 2015 (Suppl 14), 2015 | 8 | 2015 |
Price AJ, Valencia C, Tao R, Deep-Soboslay A, Hyde TM, Kleinman JE, Weinberger DR, Jaffe AE (2019) Regional heterogeneity in gene expression, regulation, and coherence in the … L Collado-Torres, EE Burke, A Peterson, J Shin, RE Straub, A Rajpurohit, ... Neuron 103 (2), 203-216, 0 | 7 | |
Defects of Myelination are Common Pathophysiology in Autism Spectrum Disorder BD Phan, J Bohlen, B Davis, Z Ze, HY Chen, B Mayfield, SC Page, ... NEUROPSYCHOPHARMACOLOGY 44 (SUPPL 1), 103-103, 2019 | 2* | 2019 |
264. Unique molecular correlates of schizophrenia and its genetic risk in the hippocampus compared to frontal cortex LC Torres, E Burke, JH Shin, R Straub, R Tao, T Hyde, J Kleinman, ... Biological Psychiatry 83 (9), S107, 2018 | 1 | 2018 |