| Post-mortem molecular profiling of three psychiatric disorders RC Ramaker, KM Bowling, BN Lasseigne, MH Hagenauer, AA Hardigan, ... Genome medicine 9 (1), 1-12, 2017 | 172 | 2017 |
| Occupancy maps of 208 chromatin-associated proteins in one human cell type EC Partridge, SB Chhetri, JW Prokop, RC Ramaker, CS Jansen, ST Goh, ... Nature 583 (7818), 720-728, 2020 | 98 | 2020 |
| Mutations in EBF3 disturb transcriptional profiles and cause intellectual disability, ataxia, and facial dysmorphism FL Harms, KM Girisha, AA Hardigan, F Kortüm, A Shukla, M Alawi, A Dalal, ... The American Journal of Human Genetics 100 (1), 117-127, 2017 | 78 | 2017 |
| Mutations in EBF3 disturb transcriptional profiles and underlie a novel syndrome of intellectual disability, ataxia and facial dysmorphism FL Harms, KM Girisha, AA Hardigan, F Kortüm, A Shukla, M Alawi, A Dalal, ... BioRxiv, 067454, 2016 | 78* | 2016 |
| A comparison of the inflammatory and proteolytic effects of dung biomass and cigarette smoke exposure in the lung D Mehra, PM Geraghty, AA Hardigan, R Foronjy PloS one 7 (12), e52889, 2012 | 77 | 2012 |
| Increased matrix metalloproteinase (MMPs) levels do not predict disease severity or progression in emphysema JM D’Armiento, MP Goldklang, AA Hardigan, P Geraghty, MD Roth, ... PloS one 8 (2), e56352, 2013 | 68 | 2013 |
| The Glutathione Peroxidase 1–Protein Tyrosine Phosphatase 1B–Protein Phosphatase 2A Axis. A Key Determinant of Airway Inflammation and Alveolar Destruction P Geraghty, AA Hardigan, AM Wallace, O Mirochnitchenko, J Thankachen, ... American journal of respiratory cell and molecular biology 49 (5), 721-730, 2013 | 65 | 2013 |
| Protein phosphatase 2A regulates innate immune and proteolytic responses to cigarette smoke exposure in the lung AM Wallace, A Hardigan, P Geraghty, S Salim, A Gaffney, J Thankachen, ... Toxicological Sciences 126 (2), 589-599, 2012 | 58 | 2012 |
| Cigarette smoke activates the proto-oncogene c-src to promote airway inflammation and lung tissue destruction P Geraghty, A Hardigan, RF Foronjy American journal of respiratory cell and molecular biology 50 (3), 559-570, 2014 | 49 | 2014 |
| RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature RC Ramaker, BN Lasseigne, AA Hardigan, L Palacio, DS Gunther, ... Oncotarget 8 (24), 38668, 2017 | 39 | 2017 |
| aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments A Alonso, BN Lasseigne, K Williams, J Nielsen, RC Ramaker, ... Bioinformatics 33 (11), 1727-1729, 2017 | 34 | 2017 |
| CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries AA Hardigan, BS Roberts, DE Moore, RC Ramaker, AL Jones, RM Myers Nucleic acids research 47 (14), e84-e84, 2019 | 28 | 2019 |
| Blocking of targeted microRNAs from next-generation sequencing libraries BS Roberts, AA Hardigan, MK Kirby, MB Fitz-Gerald, CM Wilcox, ... Nucleic acids research 43 (21), e145-e145, 2015 | 28 | 2015 |
| De novo mutations in the GTP/GDP-binding region of RALA, a RAS-like small GTPase, cause intellectual disability and developmental delay SM Hiatt, MB Neu, RC Ramaker, AA Hardigan, JW Prokop, M Hancarova, ... PLoS genetics 14 (11), e1007671, 2018 | 21 | 2018 |
| Discovery and validation of circulating biomarkers of colorectal adenoma by high-depth small RNA sequencing BS Roberts, AA Hardigan, DE Moore, RC Ramaker, AL Jones, ... Clinical Cancer Research 24 (9), 2092-2099, 2018 | 21 | 2018 |
| Decoding transcriptional enhancers: Evolving from annotation to functional interpretation KL Engel, M Mackiewicz, AA Hardigan, RM Myers, D Savic Seminars in cell & developmental biology 57, 40-50, 2016 | 15 | 2016 |
| Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations RC Ramaker, AA Hardigan, ST Goh, EC Partridge, B Wold, SJ Cooper, ... bioRxiv, 2019.12. 21.885830, 2020 | 14 | 2020 |
| A genome-wide interactome of DNA-associated proteins in the human liver RC Ramaker, D Savic, AA Hardigan, K Newberry, GM Cooper, RM Myers, ... Genome research 27 (11), 1950-1960, 2017 | 14 | 2017 |
| Angiosarcoma of the Temporal Bone: Case Report and Review of the Literature JD Bernstock, O Shafaat, A Hardigan, BM Fox, LS Moore, G Chagoya, ... World Neurosurgery 130, 351-357, 2019 | 8 | 2019 |
| The GPx1-PTP1B-PP2A axis: a key determinant of airway inflammation and alveolar destruction P Geraghty, A Hardigan, A Wallace, O Mirochnitchenko, J Thankachen, ... European Respiratory Journal 42 (Suppl 57), 2013 | 6 | 2013 |
