| Next-generation characterization of the cancer cell line encyclopedia M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov, CC Lo, ... Nature 569 (7757), 503-508, 2019 | 2577 | 2019 |
| A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ... Nature medicine 26 (5), 792-802, 2020 | 495 | 2020 |
| Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq B Li, J Gould, Y Yang, S Sarkizova, M Tabaka, O Ashenberg, Y Rosen, ... Nature methods 17 (8), 793-798, 2020 | 152 | 2020 |
| Toward universal cell embeddings: integrating single-cell RNA-seq datasets across species with SATURN Y Rosen, M Brbić, Y Roohani, K Swanson, Z Li, J Leskovec Nature Methods, 1-9, 2024 | 15 | 2024 |
| Universal cell embeddings: A foundation model for cell biology Y Rosen, Y Roohani, A Agrawal, L Samotorcan, TS Consortium, ... bioRxiv, 2023.11. 28.568918, 2023 | 13 | 2023 |
| Interactive, integrated analysis of single-cell transcriptomic and phylogenetic data with PhyloVision MG Jones, Y Rosen, N Yosef Cell reports methods 2 (4), 2022 | 5* | 2022 |
| Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq B Li, J Gould, Y Yang, S Sarkizova, M Tabaka, O Ashenberg, Y Rosen, ... | | |
