| Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism JM Buescher, W Liebermeister, M Jules, M Uhr, J Muntel, E Botella, ... Science 335 (6072), 1099-1103, 2012 | 331 | 2012 |
| The redox status of cancer cells supports mechanisms behind the Warburg effect J da Veiga Moreira, M Hamraz, M Abolhassani, E Bigan, S Pérès, ... Metabolites 6 (4), 33, 2016 | 109 | 2016 |
| Cell cycle progression is regulated by intertwined redox oscillators J da Veiga Moreira, S Peres, JM Steyaert, E Bigan, L Paulevé, ... Theoretical Biology and Medical Modelling 12, 1-14, 2015 | 78 | 2015 |
| Cancer and Alzheimer’s disease: intracellular pH scales the metabolic disorders L Schwartz, S Peres, M Jolicoeur, J da Veiga Moreira Biogerontology 21 (6), 683-694, 2020 | 53 | 2020 |
| ACoM: a classification method for elementary flux modes based on motif finding S Péres, F Vallée, M Beurton-Aimar, JP Mazat Biosystems 103 (3), 410-419, 2011 | 37 | 2011 |
| Metabolic therapies inhibit tumor growth in vivo and in silico J da Veiga Moreira, M Hamraz, M Abolhassani, L Schwartz, M Jolicœur, ... Scientific reports 9 (1), 3153, 2019 | 36 | 2019 |
| Contribution of computational tree logic to biological regulatory networks: example from pseudomonas aeruginosa S Peres, C Jean-Paul International Conference on Computational Methods in Systems Biology, 47-56, 2003 | 32 | 2003 |
| How important is thermodynamics for identifying elementary flux modes? S Peres, M Jolicœur, C Moulin, P Dague, S Schuster PLoS One 12 (2), e0171440, 2017 | 26 | 2017 |
| BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks S Rialle, L Felicori, C Dias-Lopes, S Pérès, S El Atia, AR Thierry, P Amar, ... Bioinformatics 26 (18), 2298-2304, 2010 | 22 | 2010 |
| Analysis of the variability of human normal urine by 2D-GE reveals a “public” and a “private” proteome L Molina, N Salvetat, RB Ameur, S Peres, N Sommerer, F Jarraya, ... Journal of proteomics 75 (1), 70-80, 2011 | 21 | 2011 |
| Pathway classification of TCA cycle S Pérès, M Beurton-Aimar, JP Mazat IEE Proceedings-Systems Biology 153 (5), 369-371, 2006 | 20 | 2006 |
| Combining kinetic and constraint-based modelling to better understand metabolism dynamics C Moulin, L Tournier, S Peres Processes 9 (10), 1701, 2021 | 17 | 2021 |
| A dynamic metabolic flux analysis of ABE (acetone‐butanol‐ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by‐product X Zhao, M Kasbi, J Chen, S Peres, M Jolicoeur Biotechnology and bioengineering 114 (12), 2907-2919, 2017 | 17 | 2017 |
| Fine-tuning mitochondrial activity in Yarrowia lipolytica for citrate overproduction J da Veiga Moreira, M Jolicoeur, L Schwartz, S Peres Scientific Reports 11 (1), 878, 2021 | 15 | 2021 |
| Minimality of metabolic flux modes under boolean regulation constraints M Morterol, P Dague, S Peres, L Simon Proceedings of the 12th International Workshop on Constraint-Based Methods …, 2016 | 14* | 2016 |
| Answer Set Programming for Computing Constraints-Based Elementary Flux Modes: Application to Escherichia coli Core Metabolism M Mahout, RP Carlson, S Peres Processes 8 (12), 1649, 2020 | 10 | 2020 |
| Sat-based metabolics pathways analysis without compilation S Peres, M Morterol, L Simon Computational Methods in Systems Biology: 12th International Conference …, 2014 | 9 | 2014 |
| A kinetic metabolic study of lipid production in Chlorella protothecoides under heterotrophic condition X Ren, JS Deschênes, R Tremblay, S Peres, M Jolicoeur Microbial Cell Factories 18, 1-13, 2019 | 8 | 2019 |
| Thermodynamic constraints for identifying elementary flux modes S Peres, S Schuster, P Dague Biochemical Society Transactions 46 (3), 641-647, 2018 | 8 | 2018 |
| Identifying biomarkers of Wharton’s Jelly mesenchymal stromal cells using a dynamic metabolic model: The cell passage effect B Laflaquière, G Leclercq, C Choey, J Chen, S Peres, C Ito, M Jolicoeur Metabolites 8 (1), 18, 2018 | 7 | 2018 |
