| Maize Mu Transposons Are Targeted to the 5′ Untranslated Region of the gl8 Gene and Sequences Flanking Mu Target-Site Duplications Exhibit Nonrandom … CR Dietrich, F Cui, ML Packila, J Li, DA Ashlock, BJ Nikolau, PS Schnable Genetics 160 (2), 697-716, 2002 | 141 | 2002 |
| Impact of Alu repeats on the evolution of human p53 binding sites F Cui, MV Sirotin, VB Zhurkin Biology direct 6, 1-20, 2011 | 97 | 2011 |
| Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioning in vitro F Cui, VB Zhurkin Journal of Biomolecular Structure and Dynamics 27 (6), 821-841, 2010 | 88 | 2010 |
| Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA F Cui, VB Zhurkin Nucleic acids research 37 (9), 2818-2829, 2009 | 84 | 2009 |
| GNE: a deep learning framework for gene network inference by aggregating biological information K Kc, R Li, F Cui, Q Yu, AR Haake BMC systems biology 13, 1-14, 2019 | 68 | 2019 |
| BioVR: a platform for virtual reality assisted biological data integration and visualization JF Zhang, AR Paciorkowski, PA Craig, F Cui BMC bioinformatics 20, 1-10, 2019 | 57 | 2019 |
| Noncoding RNAs binding to the nucleoid protein HU in Escherichia coli M Macvanin, R Edgar, F Cui, A Trostel, V Zhurkin, S Adhya Journal of bacteriology 194 (22), 6046-6055, 2012 | 52 | 2012 |
| Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing F Cui, HA Cole, DJ Clark, VB Zhurkin Nucleic acids research 40 (21), 10753-10764, 2012 | 46 | 2012 |
| Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest F Cui, VB Zhurkin Nucleic acids research 42 (2), 836-847, 2013 | 43 | 2013 |
| Histopathological distinction of non-invasive and invasive bladder cancers using machine learning approaches PN Yin, K Kc, S Wei, Q Yu, R Li, AR Haake, H Miyamoto, F Cui BMC medical informatics and decision making 20, 1-11, 2020 | 38 | 2020 |
| p53 binding sites in normal and cancer cells are characterized by distinct chromatin context F Bao, PR LoVerso, JN Fisk, VB Zhurkin, F Cui Cell Cycle 16 (21), 2073-2085, 2017 | 37 | 2017 |
| Novel nucleosomal particles containing core histones and linker DNA but no histone H1 HA Cole, F Cui, J Ocampo, TL Burke, T Nikitina, V Nagarajavel, ... Nucleic acids research 44 (2), 573-581, 2016 | 34 | 2016 |
| Predicting biomedical interactions with higher-order graph convolutional networks KC Kishan, R Li, F Cui, AR Haake IEEE/ACM transactions on computational biology and bioinformatics 19 (2 …, 2021 | 31 | 2021 |
| Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription D Norouzi, A Katebi, F Cui, VB Zhurkin AIMS biophysics 2 (4), 613, 2015 | 28 | 2015 |
| Refinement of NMR-determined protein structures with database derived distance constraints F Cui, R Jernigan, Z Wu Journal of Bioinformatics and Computational Biology 3 (06), 1315-1329, 2005 | 27 | 2005 |
| A computational pipeline for cross-species analysis of RNA-seq data using R and bioconductor PR LoVerso, F Cui Bioinformatics and biology insights 9, BBI. S30884, 2015 | 22 | 2015 |
| Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy F Cui, L Chen, PR LoVerso, VB Zhurkin BMC bioinformatics 15, 1-9, 2014 | 22 | 2014 |
| Cross-species Transcriptomic Comparison of In Vitro and In Vivo Mammalian Neural Cells PR LoVerso, CM Wachter, F Cui Bioinformatics and Biology insights 9, BBI. S33124, 2015 | 18 | 2015 |
| PIDD: database for protein inter-atomic distance distributions D Wu, F Cui, R Jernigan, Z Wu Nucleic acids research 35 (suppl_1), D202-D207, 2007 | 17 | 2007 |
| The proto-chromatosome: A fundamental subunit of chromatin? J Ocampo, F Cui, VB Zhurkin, DJ Clark Nucleus 7 (4), 382-387, 2016 | 14 | 2016 |
