| Cytoscape: a software environment for integrated models of biomolecular interaction networks P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ... Genome research 13 (11), 2498-2504, 2003 | 41843 | 2003 |
| Peroxiredoxins are conserved markers of circadian rhythms RS Edgar, EW Green, Y Zhao, G Van Ooijen, M Olmedo, X Qin, Y Xu, ... Nature 485 (7399), 459-464, 2012 | 984 | 2012 |
| Genome sequence of Halobacterium species NRC-1 WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ... Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000 | 934 | 2000 |
| Visualization of omics data for systems biology N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ... Nature methods 7 (Suppl 3), S56-S68, 2010 | 731 | 2010 |
| The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ... Genome biology 7, 1-16, 2006 | 671 | 2006 |
| CTCF physically links cohesin to chromatin ED Rubio, DJ Reiss, PL Welcsh, CM Disteche, GN Filippova, NS Baliga, ... Proceedings of the National Academy of Sciences 105 (24), 8309-8314, 2008 | 630 | 2008 |
| Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ... Genome research 14 (11), 2221-2234, 2004 | 383 | 2004 |
| A predictive model for transcriptional control of physiology in a free living cell R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ... Cell 131 (7), 1354-1365, 2007 | 358 | 2007 |
| Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks DJ Reiss, NS Baliga, R Bonneau BMC bioinformatics 7, 1-22, 2006 | 319 | 2006 |
| Catabolite Control Protein A (CcpA) Contributes to Virulence and Regulation of Sugar Metabolism in Streptococcus pneumoniae R Iyer, NS Baliga, A Camilli Journal of bacteriology 187 (24), 8340-8349, 2005 | 236 | 2005 |
| Adaptation of cells to new environments AN Brooks, S Turkarslan, KD Beer, F Yin Lo, NS Baliga Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (5), 544-561, 2011 | 223 | 2011 |
| The DNA-binding network of Mycobacterium tuberculosis KJ Minch, TR Rustad, EJR Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ... Nature communications 6 (1), 5829, 2015 | 217 | 2015 |
| Use and abuse of correlation analyses in microbial ecology A Carr, C Diener, NS Baliga, SM Gibbons The ISME journal 13 (11), 2647-2655, 2019 | 201 | 2019 |
| The Gaggle: an open-source software system for integrating bioinformatics software and data sources PT Shannon, DJ Reiss, R Bonneau, NS Baliga BMC bioinformatics 7, 1-13, 2006 | 198 | 2006 |
| A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers CL Plaisier, M Pan, NS Baliga Genome research 22 (11), 2302-2314, 2012 | 197 | 2012 |
| Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1 NS Baliga, SJ Bjork, R Bonneau, M Pan, C Iloanusi, MCH Kottemann, ... Genome research 14 (6), 1025-1035, 2004 | 187 | 2004 |
| Genome-wide CRISPR-Cas9 screens reveal loss of redundancy between PKMYT1 and WEE1 in glioblastoma stem-like cells CM Toledo, Y Ding, P Hoellerbauer, RJ Davis, R Basom, EJ Girard, E Lee, ... Cell reports 13 (11), 2425-2439, 2015 | 177 | 2015 |
| Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach NS Baliga, M Pan, YA Goo, EC Yi, DR Goodlett, K Dimitrov, P Shannon, ... Proceedings of the National Academy of Sciences 99 (23), 14913-14918, 2002 | 173 | 2002 |
| Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana J Ashworth, S Coesel, A Lee, EV Armbrust, MV Orellana, NS Baliga Proceedings of the National Academy of Sciences 110 (18), 7518-7523, 2013 | 155 | 2013 |
| Prevalence of transcription promoters within archaeal operons and coding sequences T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ... Molecular systems biology 5 (1), 285, 2009 | 153 | 2009 |
