| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1229 | 2020 |
| Comprehensive functional genomic resource and integrative model for the human brain D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ... Science 362 (6420), eaat8464, 2018 | 823 | 2018 |
| Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ... Nucleic acids research 41 (D1), D171-D176, 2012 | 433 | 2012 |
| Interaction of tau with the RNA-binding protein TIA1 regulates tau pathophysiology and toxicity T Vanderweyde, DJ Apicco, K Youmans-Kidder, PEA Ash, C Cook, ... Cell reports 15 (7), 1455-1466, 2016 | 291 | 2016 |
| Differential toxicity of nuclear RNA foci versus dipeptide repeat proteins in a Drosophila model of C9ORF72 FTD/ALS H Tran, S Almeida, J Moore, TF Gendron, UD Chalasani, Y Lu, X Du, ... Neuron 87 (6), 1207-1214, 2015 | 240 | 2015 |
| CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion H Mou, JL Smith, L Peng, H Yin, J Moore, XO Zhang, CQ Song, A Sheel, ... Genome biology 18, 1-8, 2017 | 189 | 2017 |
| Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale X Li, Z Li, H Zhou, SM Gaynor, Y Liu, H Chen, R Sun, R Dey, DK Arnett, ... Nature genetics 52 (9), 969-983, 2020 | 167 | 2020 |
| Genome-wide CRISPR screen identifies regulators of mitogen-activated protein kinase as suppressors of liver tumors in mice CQ Song, Y Li, H Mou, J Moore, A Park, Y Pomyen, S Hough, Z Kennedy, ... Gastroenterology 152 (5), 1161-1173. e1, 2017 | 121 | 2017 |
| A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods JE Moore, HE Pratt, MJ Purcaro, Z Weng Genome biology 21, 1-16, 2020 | 97 | 2020 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 95 | 2020 |
| Annotation of chromatin states in 66 complete mouse epigenomes during development A van der Velde, K Fan, J Tsuji, JE Moore, MJ Purcaro, HE Pratt, Z Weng Communications Biology 4 (1), 239, 2021 | 47 | 2021 |
| Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers S Fu, Q Wang, JE Moore, MJ Purcaro, HE Pratt, K Fan, C Gu, C Jiang, ... Nucleic acids research 46 (21), 11184-11201, 2018 | 45 | 2018 |
| FAVOR: functional annotation of variants online resource and annotator for variation across the human genome H Zhou, T Arapoglou, X Li, Z Li, X Zheng, J Moore, A Asok, S Kumar, ... Nucleic acids research 51 (D1), D1300-D1311, 2023 | 42 | 2023 |
| Transcriptome-wide interrogation of the functional intronome by spliceosome profiling W Chen, J Moore, H Ozadam, HP Shulha, N Rhind, Z Weng, MJ Moore Cell 173 (4), 1031-1044. e13, 2018 | 39 | 2018 |
| Genetic disruption of oncogenic Kras sensitizes lung cancer cells to Fas receptor-mediated apoptosis H Mou, J Moore, SK Malonia, Y Li, DM Ozata, S Hough, CQ Song, ... Proceedings of the National Academy of Sciences 114 (14), 3648-3653, 2017 | 38 | 2017 |
| Mammalian evolution of human cis-regulatory elements and transcription factor binding sites G Andrews, K Fan, HE Pratt, N Phalke, Zoonomia Consortium §, ... Science 380 (6643), eabn7930, 2023 | 29 | 2023 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 22 | 2023 |
| Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites HE Pratt, GR Andrews, N Phalke, JD Huey, MJ Purcaro, A van der Velde, ... Nucleic Acids Research 50 (D1), D141-D149, 2022 | 19 | 2022 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 18 | 2020 |
| The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ... bioRxiv, 2023 | 13 | 2023 |
