A practical guide to measuring local adaptation F Blanquart, O Kaltz, SL Nuismer, S Gandon Ecology letters 16 (9), 1195-1205, 2013 | 602 | 2013 |
The effects of migration and drift on local adaptation to a heterogeneous environment F Blanquart, S Gandon, SL Nuismer Journal of evolutionary biology 25 (7), 1351-1363, 2012 | 169 | 2012 |
Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage S Lehtinen, F Blanquart, NJ Croucher, P Turner, M Lipsitch, C Fraser Proceedings of the National Academy of Sciences 114 (5), 1075-1080, 2017 | 142 | 2017 |
Quantifying the relationship between SARS-CoV-2 viral load and infectiousness A Marc, M Kerioui, F Blanquart, J Bertrand, O Mitja, M Corbacho-Monné, ... Elife 10, e69302, 2021 | 124 | 2021 |
What drives parallel evolution? How population size and mutational variation contribute to repeated evolution SF Bailey, F Blanquart, T Bataillon, R Kassen BioEssays 39 (1), 1-9, 2017 | 116 | 2017 |
Properties of selected mutations and genotypic landscapes under Fisher's geometric model F Blanquart, G Achaz, T Bataillon, O Tenaillon Evolution 68 (12), 3537–3554, 2014 | 91 | 2014 |
Phage–host coevolution in natural populations D Piel, M Bruto, Y Labreuche, F Blanquart, D Goudenège, R Barcia-Cruz, ... Nature Microbiology 7 (7), 1075-1086, 2022 | 90* | 2022 |
Evolutionary epidemiology models to predict the dynamics of antibiotic resistance F Blanquart Evolutionary applications 12 (3), 365-383, 2019 | 83 | 2019 |
Early assessment of diffusion and possible expansion of SARS-CoV-2 Lineage 20I/501Y. V1 (B. 1.1. 7, variant of concern 202012/01) in France, January to March 2021 A Gaymard, P Bosetti, A Feri, G Destras, V Enouf, A Andronico, S Burrel, ... Eurosurveillance 26 (9), 2100133, 2021 | 81 | 2021 |
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ... Virus evolution 4 (1), vey007, 2018 | 81 | 2018 |
On the evolutionary ecology of multidrug resistance in bacteria S Lehtinen, F Blanquart, M Lipsitch, C Fraser, ... PLoS pathogens 15 (5), e1007763, 2019 | 80 | 2019 |
A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda F Blanquart, MK Grabowski, J Herbeck, F Nalugoda, D Serwadda, ... Elife 5, e20492, 2016 | 75 | 2016 |
Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe F Blanquart, C Wymant, M Cornelissen, A Gall, M Bakker, D Bezemer, ... PLoS biology 15 (6), e2001855, 2017 | 70 | 2017 |
The evolution of antibiotic resistance in a structured host population F Blanquart, S Lehtinen, M Lipsitch, C Fraser Journal of The Royal Society Interface 15 (143), 20180040, 2018 | 66 | 2018 |
Evolution of migration in a periodically changing environment F Blanquart, S Gandon The American Naturalist 177 (2), 188-201, 2011 | 64 | 2011 |
Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action P Czuppon, F Débarre, A Gonçalves, O Tenaillon, AS Perelson, J Guedj, ... PLoS computational biology 17 (3), e1008752, 2021 | 63* | 2021 |
A highly virulent variant of HIV-1 circulating in the Netherlands C Wymant, D Bezemer, F Blanquart, L Ferretti, A Gall, M Hall, T Golubchik, ... Science 375 (6580), 540-545, 2022 | 59 | 2022 |
Time‐shift experiments and patterns of adaptation across time and space F Blanquart, S Gandon Ecology letters 16 (1), 31-38, 2013 | 54 | 2013 |
An evolutionary model to predict the frequency of antibiotic resistance under seasonal antibiotic use, and an application to Streptococcus pneumoniae F Blanquart, S Lehtinen, C Fraser Proceedings of the Royal Society B: Biological Sciences 284 (1855), 20170679, 2017 | 49 | 2017 |
Characterisation of vaccine breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community, France, June to July 2021 F Blanquart, C Abad, J Ambroise, M Bernard, G Cosentino, JM Giannoli, ... Eurosurveillance 26 (37), 2100824, 2021 | 47 | 2021 |