IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies LT Nguyen, HA Schmidt, A Von Haeseler, BQ Minh Molecular biology and evolution 32 (1), 268-274, 2015 | 18717 | 2015 |
ModelFinder: fast model selection for accurate phylogenetic estimates S Kalyaanamoorthy, BQ Minh, TKF Wong, A Von Haeseler, LS Jermiin Nature methods 14 (6), 587-589, 2017 | 10991 | 2017 |
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era BQ Minh, HA Schmidt, O Chernomor, D Schrempf, MD Woodhams, ... Molecular biology and evolution 37 (5), 1530-1534, 2020 | 7279 | 2020 |
UFBoot2: improving the ultrafast bootstrap approximation DT Hoang, O Chernomor, A Von Haeseler, BQ Minh, LS Vinh Molecular biology and evolution 35 (2), 518-522, 2018 | 6726 | 2018 |
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis J Trifinopoulos, LT Nguyen, A von Haeseler, BQ Minh Nucleic acids research 44 (W1), W232-W235, 2016 | 3757 | 2016 |
Ultrafast approximation for phylogenetic bootstrap BQ Minh, MAT Nguyen, A Von Haeseler Molecular biology and evolution 30 (5), 1188-1195, 2013 | 3560 | 2013 |
Terrace aware data structure for phylogenomic inference from supermatrices O Chernomor, A Von Haeseler, BQ Minh Systematic biology 65 (6), 997-1008, 2016 | 1648 | 2016 |
New methods to calculate concordance factors for phylogenomic datasets BQ Minh, MW Hahn, R Lanfear Molecular biology and evolution 37 (9), 2727-2733, 2020 | 427 | 2020 |
Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation HC Wang, BQ Minh, E Susko, AJ Roger Systematic biology 67 (2), 216-235, 2018 | 350 | 2018 |
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista F Burki, M Kaplan, DV Tikhonenkov, V Zlatogursky, BQ Minh, ... Proceedings of the Royal Society B: Biological Sciences 283 (1823), 20152802, 2016 | 281 | 2016 |
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes RJE Alves, BQ Minh, T Urich, A von Haeseler, C Schleper Nature communications 9 (1), 1517, 2018 | 272 | 2018 |
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh BMC evolutionary biology 18, 1-11, 2018 | 164 | 2018 |
The phylogenetic likelihood library T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ... Systematic biology 64 (2), 356-362, 2015 | 161 | 2015 |
Your face is not your password face authentication bypassing lenovo–asus–toshiba NM Duc, BQ Minh Black Hat Briefings 4, 158, 2009 | 138 | 2009 |
GHOST: recovering historical signal from heterotachously evolved sequence alignments SM Crotty, BQ Minh, NG Bean, BR Holland, J Tuke, LS Jermiin, ... Systematic biology 69 (2), 249-264, 2020 | 136 | 2020 |
Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life U Krauss, BQ Minh, A Losi, W Gärtner, T Eggert, A von Haeseler, ... Journal of bacteriology 191 (23), 7234-7242, 2009 | 136 | 2009 |
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects E Dell’Ampio, K Meusemann, NU Szucsich, RS Peters, B Meyer, J Borner, ... Molecular biology and evolution 31 (1), 239-249, 2014 | 133 | 2014 |
The prevalence and impact of model violations in phylogenetic analysis S Naser-Khdour, BQ Minh, W Zhang, EA Stone, R Lanfear Genome biology and evolution 11 (12), 3341-3352, 2019 | 120 | 2019 |
Corrigendum to: IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era BQ Minh, HA Schmidt, O Chernomor, D Schrempf, MD Woodhams, ... Molecular Biology and Evolution 37 (8), 2461-2461, 2020 | 116 | 2020 |
pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies BQ Minh, LS Vinh, A Von Haeseler, HA Schmidt Bioinformatics 21 (19), 3794-3796, 2005 | 104 | 2005 |